Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271993g00013 ATGGCGAAGATCCCACACAAGAAAAGCCCCATAGTCAAGAATACTAACACTAATGATAGTAGCACTACTACTACTACTACTTCTTCTTCTTCTTCTACAGCCACAGCATCCAAGAAAGTTGTGAAAAAAAGAACTCGCAAAACCATTCCAAGAGATTCACCTCCTCAACGAAGCTCTGTCTACCGTGGTGTCACTAGGCATCGGTGGACGGGACGATATGAGGCTCATTTGTGGGACAAGAATTGTTGGAATGAATCACAGACCAAGAAAGGAAGACAAGTATATTTAGGAGCATATGATGATGAAGAAGCGGCTGCACGTGCTTATGACTTGGCTGCATTGAAGTATTGGGGCCAACACACCATCCTCAATTTTCCTGCATCAAATTACGAAGAGGAGCTGAAGGACATGGAGGGACAGTCAAAAGAAGAATATATTGGATCCTTAAGAAGAAAAAGCAGTGGATTCTCAAGAGGAGTCTCAAAATACAGAGGAGTAGCAAGACACCACCACAATGGAAGATGGGAAGCTCGAATTGGGAGGGTCTTTGGCAACAAGTATCTATATCTTGGAACTTATGCTACACAAGAAGAAGCTGCTATGGCTTATGACATGGCTGCCATAGAGTATCGTGGACTTAATGCTGTAACAAACTTTGACCTTAGCCACTATATCCATTGGCTACGTCCTAAACTCCAAGAGAACCAAAAAAACCCTACCCATAATCAAGAACCTTCTTCGAGTAGCTCCGAGCTCGACAATCAATTAGGGTTTGGTGATGATCAAGTTGGTTTAACCACCGGTGAAATTAGGTCTGAAGAATCGACCGAATTTAAAATTGGTGGTGAAACCATGCCGACTTCAGCACTTGGAATTCTTTTAAAATCACCCAAATTCAAAGAGATGTTAGAAAGAACTTCAATTGACGAAGATAATCTTCAATCTCAAACTTCTTCAGAATCTAACCCTAATCCTCGGCGTACTTTCCCCGAAGACATTCAAACTTTCTTTGAGAGCCATGATTCCAATATCTACACTGAAAATGATGACATTATATTTAGTGAATTGGGTTCATTTTCATCAACGCCATTTTTTCATTATGAGCTTGATGCATAA 1116 0.4095 MAKIPHKKSPIVKNTNTNDSSTTTTTTSSSSSTATASKKVVKKRTRKTIPRDSPPQRSSVYRGVTRHRWTGRYEAHLWDKNCWNESQTKKGRQVYLGAYDDEEAAARAYDLAALKYWGQHTILNFPASNYEEELKDMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAMAYDMAAIEYRGLNAVTNFDLSHYIHWLRPKLQENQKNPTHNQEPSSSSSELDNQLGFGDDQVGLTTGEIRSEESTEFKIGGETMPTSALGILLKSPKFKEMLERTSIDEDNLQSQTSSESNPNPRRTFPEDIQTFFESHDSNIYTENDDIIFSELGSFSSTPFFHYELDA 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271993g00013 371 SUPERFAMILY DNA-binding domain 161 222 IPR016177 GO:0003677
Stsc271993g00013 371 SMART rav1_2 60 132 IPR001471 GO:0003700|GO:0006355
Stsc271993g00013 371 SMART rav1_2 162 226 IPR001471 GO:0003700|GO:0006355
Stsc271993g00013 371 SUPERFAMILY DNA-binding domain 59 128 IPR016177 GO:0003677
Stsc271993g00013 371 Gene3D AP2/ERF domain 60 129 IPR036955 GO:0003700|GO:0006355
Stsc271993g00013 371 Gene3D AP2/ERF domain 161 222 IPR036955 GO:0003700|GO:0006355
Stsc271993g00013 371 FunFam AP2-like ethylene-responsive transcription factor 161 222 - -
Stsc271993g00013 371 MobiDBLite consensus disorder prediction 1 61 - -
Stsc271993g00013 371 CDD AP2 161 222 IPR001471 GO:0003700|GO:0006355
Stsc271993g00013 371 MobiDBLite consensus disorder prediction 307 330 - -
Stsc271993g00013 371 MobiDBLite consensus disorder prediction 10 38 - -
Stsc271993g00013 371 PRINTS Ethylene responsive element binding protein signature 202 222 IPR001471 GO:0003700|GO:0006355
Stsc271993g00013 371 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Stsc271993g00013 371 FunFam AP2-like ethylene-responsive transcription factor 59 128 - -
Stsc271993g00013 371 MobiDBLite consensus disorder prediction 235 263 - -
Stsc271993g00013 371 MobiDBLite consensus disorder prediction 309 330 - -
Stsc271993g00013 371 ProSiteProfiles AP2/ERF domain profile. 60 126 IPR001471 GO:0003700|GO:0006355
Stsc271993g00013 371 ProSiteProfiles AP2/ERF domain profile. 162 220 IPR001471 GO:0003700|GO:0006355
Stsc271993g00013 371 MobiDBLite consensus disorder prediction 235 256 - -
Stsc271993g00013 371 Pfam AP2 domain 161 212 IPR001471 GO:0003700|GO:0006355
Stsc271993g00013 371 Pfam AP2 domain 59 118 IPR001471 GO:0003700|GO:0006355
Stsc271993g00013 371 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271993g00013 Stsc-Chr271993 58889 64209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271993g00013 38 224 AP2-EREBP Transcription Factor Family AT1G72570 66.842 4.06e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc271993g00013 AP2 2.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271993g00013 K09285 - fve:101307913 446.432