Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271993g00004 ATGATAAACACCACATTCATTCATTCTCATTTTCATAACAGTAACCAACACCAATTTCTCTTTTCTTTTCAATTAACCAAGAAGAAGATGAAGGAGAGGATTTGTGAGCTCTGCAACCAAAAAGCTTCCCTCTTCTGCGCCTCCGACTCCGCCTTCCTCTGCTCCAAATGCGACGCCACCGTTCATAATGCAAACTTTCTCGTCGCTCGCCACCTCCGCCGCCTCCTCTGCTTCCACTGCAATTCCTTCTCCGGAATCTACATCTCCGGCGCCTCCTCACCTCGCACCGCCGCCGAACACACCACCTGCCGCTCCTGCTCCTGCTCCCCGCCGGACGAGGCCAATTCCCTCTCTTCTTCTCCTCCTCCTCCTTCTTCCTCCACCTCCTCTGCATGCGTTTCCAGCTCGGAGCCACGCACCGGAAACAACAACAACAACAACAAGATCAGATCAAAACACTTGCCGAAAAAGAGAATCAGAACGGTAACATCGTCCGGTTCGGCGGTGACGACGGACGGCGAGGATTTTTCAACGGCGAAGCAAAAGCGAGCGAGGAATAGTAGTAATGGCGGTGGATCTGGTTCAGATGAGGTAGTTAGGGCGGTGAGGAAAGAGTATTCATCAGTATTCGCGAAATGGAGTGAGGAATTAGGGTTGGGATTAAACGACGGTGAACGCGTGTCGTATCTGGCGTGCAGAGCGTTGAGGGTGTGGTTTGGAAAATGGAAGGAAGGAGGAGTTGGAATTCCGTATAAGGTGGGTTGTGCGACGTCGTTTTGGTTTGGTGTGAGATTTTGTGGGATCGGTTGCATCGCCACGTTTGAGAATCTGCGGAAATTAGAAGTGATCTCAGGTGTGCCAGCTAAGCTCATTCTCCAAGCATATGCCTTCCTCGCACGTGTCTTCTTCTTCTCCCAACAACACAAACAGCATAATTTCTCCCATTTGCAAGAAGGCTCTGATGAATCTTAG 972 0.5051 MINTTFIHSHFHNSNQHQFLFSFQLTKKKMKERICELCNQKASLFCASDSAFLCSKCDATVHNANFLVARHLRRLLCFHCNSFSGIYISGASSPRTAAEHTTCRSCSCSPPDEANSLSSSPPPPSSSTSSACVSSSEPRTGNNNNNNKIRSKHLPKKRIRTVTSSGSAVTTDGEDFSTAKQKRARNSSNGGGSGSDEVVRAVRKEYSSVFAKWSEELGLGLNDGERVSYLACRALRVWFGKWKEGGVGIPYKVGCATSFWFGVRFCGIGCIATFENLRKLEVISGVPAKLILQAYAFLARVFFFSQQHKQHNFSHLQEGSDES 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271993g00004 323 MobiDBLite consensus disorder prediction 114 149 - -
Stsc271993g00004 323 MobiDBLite consensus disorder prediction 160 175 - -
Stsc271993g00004 323 Pfam B-box zinc finger 31 71 IPR000315 GO:0008270
Stsc271993g00004 323 CDD Bbox1_BBX-like 34 76 - -
Stsc271993g00004 323 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 34 113 - -
Stsc271993g00004 323 SMART bboxneu5 30 76 IPR000315 GO:0008270
Stsc271993g00004 323 ProSiteProfiles Zinc finger B-box type profile. 30 76 IPR000315 GO:0008270
Stsc271993g00004 323 MobiDBLite consensus disorder prediction 114 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271993g00004 Stsc-Chr271993 29806 31131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271993g00004 35 94 C2C2-CO-like Transcription Factor Family AT3G21150 53.333 8.62e-16 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc271993g00004 zf-B_box 3.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271993g00004 - - adu:107463828 389.037