Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271992g00015 ATGGACATGGACCTTGATTGGGATCTCCATGCGGTGGTTCGAGGCTGCTCCACCCTCACCTCTTCATCTTCTTCTTCTACCTCTTCATCCTCTTCTGGCTTCACTTACTTTCACTCTCAAGCTTCTCCTTCTTCTGTTCTTGATGCTGAAGAACAACAACAACAACAAGGAACTACCAACAATGTTATGTCCCTTTATTCATACCCCTTTGGACCAAGGTCTGCCATTGAAGAGTTGCATGAGCTCTGCAAGCCTTTCTTCACAAAATCACTCCCTCAAGCTTCTTCTCCTCTCTCTTCATTCTCTGTAGCAGCGCCGCCGCCACCACCACCACCAAAACCGGTTCTTCAACCACAAGAGAAGCAAAATCAGCAGCAGAGAACCAACACCAACACCAACAAGCATCCTCGCTCTGGTGGCGATTCTGGCACCACCCCAAGATCTAAAAGAAGGAAGAACCAGCTCAAGAGAGTTTGTCAAGTTCCAGTTGAGAATCTCTCCTCAGACATATGGGCATGGAGGAAATATGGACAGAAACCCATAAAGGGGTCACCATATCCAAGGGGATACTATAGATGTAGCAGCTCAAAGGGATGTTTGGCAAGGAAACAAGTTGAAAGGAACAGAACAGATCCAACAATGTTCATAGTAACCTACACAGCTGAACACAACCACCCTGCTCCAACTCACAGGAACTCCCTTGCCGGATCGACGCGCCAAAAGCCGTTTACACCACAGGCAGCCGCTGCGGCCTTGACACCGACGAAACCGGCTTCGCCCGATACCCCGGTCGCGGAAGAAAAGTCATCAGCCAGCAGAGAAGAGAAGGAAGAGGATTTGGGTGATGATGATGATGGAGATGAGTTTGGTTTATCTGATATGGTGATACCTGATGATTTCTTTGATAGCTTTGATGAACTGAAAGATATCACAGGTATTGATGGTGATGATGATGGAGTTAGAGGAGATAGTAGTTGCTTTGTTGATCCCTTTTCAGCCATTGCTATGCCTTCTTGGGTTGCCAATAGTGCTGCCACTGCTGCTGGTGGTAGCTGA 1056 0.4773 MDMDLDWDLHAVVRGCSTLTSSSSSSTSSSSSGFTYFHSQASPSSVLDAEEQQQQQGTTNNVMSLYSYPFGPRSAIEELHELCKPFFTKSLPQASSPLSSFSVAAPPPPPPPKPVLQPQEKQNQQQRTNTNTNKHPRSGGDSGTTPRSKRRKNQLKRVCQVPVENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRTDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPFTPQAAAAALTPTKPASPDTPVAEEKSSASREEKEEDLGDDDDGDEFGLSDMVIPDDFFDSFDELKDITGIDGDDDGVRGDSSCFVDPFSAIAMPSWVANSAATAAGGS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271992g00015 351 SMART WRKY_cls 167 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc271992g00015 351 FunFam WRKY transcription factor 22 151 221 - -
Stsc271992g00015 351 SUPERFAMILY WRKY DNA-binding domain 165 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc271992g00015 351 Gene3D WRKY domain 151 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc271992g00015 351 MobiDBLite consensus disorder prediction 225 244 - -
Stsc271992g00015 351 MobiDBLite consensus disorder prediction 224 294 - -
Stsc271992g00015 351 MobiDBLite consensus disorder prediction 19 60 - -
Stsc271992g00015 351 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 308 IPR044810 GO:0003700
Stsc271992g00015 351 MobiDBLite consensus disorder prediction 118 143 - -
Stsc271992g00015 351 ProSiteProfiles WRKY domain profile. 162 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc271992g00015 351 MobiDBLite consensus disorder prediction 97 159 - -
Stsc271992g00015 351 MobiDBLite consensus disorder prediction 277 292 - -
Stsc271992g00015 351 MobiDBLite consensus disorder prediction 102 117 - -
Stsc271992g00015 351 Pfam WRKY DNA -binding domain 169 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271992g00015 Stsc-Chr271992 89313 91615 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271992g00015 3 350 WRKY Transcription Factor Family AT4G01250 45.915 4.11e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc271992g00015 WRKY 3.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271992g00015 K13425 - gmx:100798084 347.821