Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc271992g00013 | ATGGAAAATCAAGACCCACCAAATCCACCACCACCACCATTATTACTATTGCCAACACCCCAAGACAACCACAACAACAACAATATTCCCTTTTTACCCTTCACAACACTACCTTCTTCCATGCTTCATCAAAACCCTTTGCAAATGGAACCTCAATCTCAACCTAATAATAATACCCTTGGTTGTGACATCAATGATGATTATTATTGGGGCAACATTAATTATGTTTTGTCGGCCGCCAGCGGCGGTGGCAGCCACAACAACGCTAGTGCAACCTTTCACTGTGATGCCAAGGAAACAACAACAACCGCAATAGAATGCGCTTCTTCTTTTCCTTCTCCTTCTTCTTTTAACATGGCCGAAAATGTTAGCGAAACTCGTGACATAGAGGAAAATGGTGAGAAGGAGAAGAAGAAATTGGTGGGAAAAGTGAAGAAGGCAACAAGAGTGCCAAGGTTTGCATTCCAAACAAGAAGTGTTGATGATATTTTGGATGATGGTTACCGCTGGAGGAAGTATGGCCAGAAAGCAGTGAAAAATAGCACATATCCTAGAAGCTACTACCGTTGCACGCATCACACATGCAATGTGAAGAAACAAGTGCAGAGGCTGTCAAAAGACACAAGCATTGTGGTCACAACCTACGAGGGAATCCATAACCATCCTTGCGAGAAGCTTATGGAAACTTTGACTCCTCTTCTCAAACAGATTCAGTTTCTTGCTACCATCTAA | 732 | 0.4262 | MENQDPPNPPPPPLLLLPTPQDNHNNNNIPFLPFTTLPSSMLHQNPLQMEPQSQPNNNTLGCDINDDYYWGNINYVLSAASGGGSHNNASATFHCDAKETTTTAIECASSFPSPSSFNMAENVSETRDIEENGEKEKKKLVGKVKKATRVPRFAFQTRSVDDILDDGYRWRKYGQKAVKNSTYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQIQFLATI | 243 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc271992g00013 | 243 | SMART | WRKY_cls | 164 | 223 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Stsc271992g00013 | 243 | FunFam | WRKY transcription factor 57 | 150 | 224 | - | - | |
| Stsc271992g00013 | 243 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 52 | 225 | IPR044810 | GO:0003700 | |
| Stsc271992g00013 | 243 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Stsc271992g00013 | 243 | Gene3D | WRKY domain | 149 | 223 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
| Stsc271992g00013 | 243 | Pfam | WRKY DNA -binding domain | 165 | 222 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Stsc271992g00013 | 243 | ProSiteProfiles | WRKY domain profile. | 159 | 224 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Stsc271992g00013 | 243 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Stsc271992g00013 | 243 | SUPERFAMILY | WRKY DNA-binding domain | 159 | 223 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc271992g00013 | Stsc-Chr271992 | 73738 | 75234 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc271992g00013 | 133 | 243 | WRKY Transcription Factor Family | AT5G41570 | 71.171 | 5.03e-56 | 175 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | WRKY | Stsc271992g00013 | WRKY | 3.1e-25 | CL0274 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc271992g00013 | - | - | aip:107638083 | 363.614 |