Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271992g00009 ATGTCATCTCCACCTTCTCCACCCTCATTCCTCAACCACCTTGGCCTTGGCTACTCCATAGCCATAGCCCTCGCTTTCCTTGTCCTCCTCTCCACCCTCCTCTTATCCTCTTACCTCTGCTGTAACCGCAACCGTAATAACCGCAACAACAACAACAACCAACGCTCCCACCCCGCCGTCACCAACCGTGACGGCGTCGTTCTGCCACGAATAATCTTCGTGGCAGAAGGCGATGACGACGAAGAAGGAGGAGACGAAGAACGCGGTGCGGTGGGGTTGGATCAGAACGTCATAAACTCGTATCCGAGGTTTCAGTTCAGCAGGGACAGCAGCAACAATGGACAAAACACCACGTGTTCCATATGTTTGTGTGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCGGAGTGCAGGCACTACTTCCACGTGTGCTGTCTTGATTCCTGGCTTAGGCTTAACGGATCCTGCCCCGTTTGTCGGAACTCGCCGCTTCCGACGCCGCAGCCTACGCCGCTGTCGACGCCGCTGCAGGAGGTGGTGCCGTTGTCTCAGTATGCTGCTGATAGGAGGAGGAGGTGA 582 0.555 MSSPPSPPSFLNHLGLGYSIAIALAFLVLLSTLLLSSYLCCNRNRNNRNNNNNQRSHPAVTNRDGVVLPRIIFVAEGDDDEEGGDEERGAVGLDQNVINSYPRFQFSRDSSNNGQNTTCSICLCEYKDSEMLRMMPECRHYFHVCCLDSWLRLNGSCPVCRNSPLPTPQPTPLSTPLQEVVPLSQYAADRRRR 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271992g00009 193 MobiDBLite consensus disorder prediction 168 193 - -
Stsc271992g00009 193 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Stsc271992g00009 193 SUPERFAMILY RING/U-box 105 169 - -
Stsc271992g00009 193 SMART ring_2 119 160 IPR001841 -
Stsc271992g00009 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 165 IPR013083 -
Stsc271992g00009 193 PANTHER RING-H2 FINGER PROTEIN ATL67 9 193 IPR044289 GO:0016567|GO:0016740
Stsc271992g00009 193 Pfam Ring finger domain 118 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271992g00009 Stsc-Chr271992 55211 56531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271992g00009 3 184 C3H Transcription Factor Family AT5G07040 40.217 5.94e-34 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271992g00009 - - pvy:116141324 245.743