Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271989g00017 ATGAAGACCCTTCTAGATGCTGACACCATTCTTAACTTCAACAATCAAAATAATATAGTAGGTGTTCCTTCACAAACTCATCACCACCACCAAGCACAACCTCCTTCTGCTGCTGTAGAAGCAGTTCTACCACCAAACTTTTGCTGTTACTATGGAGTTGAAGCTGAAAATGTTGGATGGTATCCAGCACTCCCTATCTTACCCCTTAAATCCGATGGCTCTCTCTTTGATATAGAAGCTCTGAGCAGAACTAAACAACAAGGCATGGGAGTGGCAACTACTTCTTCAGCACCAAAACTGGAGGATTTCTTTGGTTGCCAAAGCCAAGCAGTGGTGACTCCTGATGAATGCAACAACACCAGAGAAGCACTGCCTCTGAGCTATAACATGTTTCAAAATCCAAATTATCTAAATCATGTACAAGAGAATATCAACTTGCTTCAGAATCAGCAGCAAAACTCATATTATTCTTCTGCATTAAGAAGCAACAGCAATAACCATCATCAGGTGATGCTACAAGGATACAATATGGTTAAGGAGGAAGCTCCTGGTATACACCATGCAATGGAGGCAAAACTGGTTATTCCTTTGGAGGATAATAGAGGTGAATCTCTGTCCATTGGATCAGTTGCTTTCGGGGATTTACAATCACTGAGGTTGTCCATGAGTCCAAGCTCGCAATCAAGTTGTGTCACAAGCTCACAACAAACACCACATGCTGTCATTGATTCTATAGGCATGAGTAGTACAAAGAAAAGGGGCCATGATGAAATGGTGGAGCAGAACCAGAAGCAGCAGCAAATTGTTCATAGAAAATCTATTGATACCTTTGGCCAGAGAACTTCTCAATATAGAGGTGTTACAAGACATAGGTGGACTGGGAGATATGAAGCTCATCTATGGGACAATAGTTGCAAGAAAGAAGGTCAGAGTAGGAAAGGAAGGCAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCAGCGAGAGCTTATGATTTGGCTGCACTCAAGTATTGGGGACCCTCCACTCATATAAATTTTCCATTGGAAAATTATCAAAATGAACTTGTGCAAATGAAGAACATGACCAGGCAGGAATATGTTGCTCATTTACGAAGAAAAAGCAGCGGATTCTCAAGAGGGGCTTCAATGTACAGAGGAGTAACAAGACACCATCAGCATGGAAGGTGGCAAGCCCGAATTGGAAGAGTGGCTGGAAACAAAGATCTATATCTTGGGACATTCAGTACACAAGAGGAAGCAGCCGAAGCATACGACATTGCTGCAATAAAATTCCGAGGAGTTAATGCAGTAACTAACTTTGAAATAATCAGATACGATGTGGAAAAAATTATGGCAAGCAATGACCTTCTTAGCATTGAACAAGCTAAGCGAAAAAGAGAGGACCATAAAGCATCTACATATGATGAAGACATTATTATTGAAGCAGCAGAATCCATTCAAATGCACAAGAGCTGCAAAAATCATCATCATCAGATCATGATGATTAATCCACCAACAGTGGCTTTAGAGGAGGAATCAAGTAATAAGATTATTGGAACACATATTTCAGATCCTTGTTCGCTTATTATTAGTGATGCAGATAAGACAATTCTCTATGGAAGGCCTTCAACAACAGCAGAAGCACATCTCAGAGCTAATAAGATTTCCTTGCCTCATATGCCACTTTTTGCTGCATGGACCGACGCATAG 1716 0.4085 MKTLLDADTILNFNNQNNIVGVPSQTHHHHQAQPPSAAVEAVLPPNFCCYYGVEAENVGWYPALPILPLKSDGSLFDIEALSRTKQQGMGVATTSSAPKLEDFFGCQSQAVVTPDECNNTREALPLSYNMFQNPNYLNHVQENINLLQNQQQNSYYSSALRSNSNNHHQVMLQGYNMVKEEAPGIHHAMEAKLVIPLEDNRGESLSIGSVAFGDLQSLRLSMSPSSQSSCVTSSQQTPHAVIDSIGMSSTKKRGHDEMVEQNQKQQQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELVQMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFEIIRYDVEKIMASNDLLSIEQAKRKREDHKASTYDEDIIIEAAESIQMHKSCKNHHHQIMMINPPTVALEEESSNKIIGTHISDPCSLIISDADKTILYGRPSTTAEAHLRANKISLPHMPLFAAWTDA 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271989g00017 571 CDD AP2 282 349 IPR001471 GO:0003700|GO:0006355
Stsc271989g00017 571 ProSiteProfiles AP2/ERF domain profile. 385 443 IPR001471 GO:0003700|GO:0006355
Stsc271989g00017 571 SUPERFAMILY DNA-binding domain 282 351 IPR016177 GO:0003677
Stsc271989g00017 571 Pfam AP2 domain 386 435 IPR001471 GO:0003700|GO:0006355
Stsc271989g00017 571 Pfam AP2 domain 283 341 IPR001471 GO:0003700|GO:0006355
Stsc271989g00017 571 Gene3D AP2/ERF domain 282 351 IPR036955 GO:0003700|GO:0006355
Stsc271989g00017 571 Gene3D AP2/ERF domain 385 445 IPR036955 GO:0003700|GO:0006355
Stsc271989g00017 571 PRINTS Ethylene responsive element binding protein signature 284 295 IPR001471 GO:0003700|GO:0006355
Stsc271989g00017 571 PRINTS Ethylene responsive element binding protein signature 425 445 IPR001471 GO:0003700|GO:0006355
Stsc271989g00017 571 FunFam AP2-like ethylene-responsive transcription factor ANT 282 351 - -
Stsc271989g00017 571 FunFam AP2-like ethylene-responsive transcription factor 384 445 - -
Stsc271989g00017 571 ProSiteProfiles AP2/ERF domain profile. 283 349 IPR001471 GO:0003700|GO:0006355
Stsc271989g00017 571 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 93 478 - -
Stsc271989g00017 571 CDD AP2 384 444 IPR001471 GO:0003700|GO:0006355
Stsc271989g00017 571 SMART rav1_2 385 449 IPR001471 GO:0003700|GO:0006355
Stsc271989g00017 571 SMART rav1_2 283 355 IPR001471 GO:0003700|GO:0006355
Stsc271989g00017 571 SUPERFAMILY DNA-binding domain 384 443 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271989g00017 Stsc-Chr271989 76535 79615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271989g00017 46 571 AP2-EREBP Transcription Factor Family AT4G37750 48.474 1.90e-156 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc271989g00017 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271989g00017 K09285 - gmx:100792451 555.829