Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271989g00016 ATGCTCTCTGCTATCTCTGCCTCCGACCCTTTGCTCGGAAACCCTTTTGCCTCAGTGTTTGACGGCGCTTTCACGCCGTGGGACTGCACTGACGTTTTCTTTCCAATTAAACCCACCAGCCCTAACCAAGCCGCTATTACCACTTCGAGCTCCGGTTCGGATGAACCGAACCAAAACCACGTAGAGGAAAAGCCCGGTTCGGAGGCGGTTATGGACGACCGGAAACGGCGGAGAATGATATCGAACAGGGAATCAGCGAGGAGGTCACGGATGCGGAAGCAGAGGCACCTAGAGAACCTGCGGAACGAGTTGAAGGCGTGTAGAGTAGAAAACCAGGAGGTGAAGAACCGGTTGCGGTTGATTTTGCATCATTGTAACCGCGTGCGAACCGAAAACGATTGGCTAAGCTCTGAGAGAACCATGTTACGGCAGAAACTGTCGTACATGACTCAAATTTTGTTATTCCAACAACTTCAACCGCAACCTTTCTCCTCCTCTACATGCCCATGCAATAATAATGTCACGCCGCAATGA 534 0.5112 MLSAISASDPLLGNPFASVFDGAFTPWDCTDVFFPIKPTSPNQAAITTSSSGSDEPNQNHVEEKPGSEAVMDDRKRRRMISNRESARRSRMRKQRHLENLRNELKACRVENQEVKNRLRLILHHCNRVRTENDWLSSERTMLRQKLSYMTQILLFQQLQPQPFSSSTCPCNNNVTPQ 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271989g00016 177 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 72 135 IPR004827 GO:0003700|GO:0006355
Stsc271989g00016 177 MobiDBLite consensus disorder prediction 42 76 - -
Stsc271989g00016 177 MobiDBLite consensus disorder prediction 57 76 - -
Stsc271989g00016 177 Gene3D - 73 125 - -
Stsc271989g00016 177 PANTHER BZIP TRANSCRIPTION FACTOR 44 41 156 - -
Stsc271989g00016 177 CDD bZIP_plant_GBF1 75 126 IPR045314 GO:0003700|GO:0006355
Stsc271989g00016 177 Coils Coil 83 117 - -
Stsc271989g00016 177 SUPERFAMILY Leucine zipper domain 74 124 IPR046347 GO:0003700|GO:0006355
Stsc271989g00016 177 MobiDBLite consensus disorder prediction 42 56 - -
Stsc271989g00016 177 Pfam bZIP transcription factor 73 132 IPR004827 GO:0003700|GO:0006355
Stsc271989g00016 177 FunFam BZIP transcription factor 72 123 - -
Stsc271989g00016 177 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 77 92 IPR004827 GO:0003700|GO:0006355
Stsc271989g00016 177 SMART brlzneu 70 134 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271989g00016 Stsc-Chr271989 70463 71810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271989g00016 1 157 bZIP Transcription Factor Family AT3G49760 38.125 8.77e-31 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc271989g00016 bZIP_1 5.1e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271989g00016 - - qsa:O6P43_033933 192.971