Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271989g00009 ATGCCAATGTTTCAGGGTTGCAAGAGGGACATGGTAGCTGGCTACGAGGGTGGAGGTGACGGCCAGATTCTAGATCTGGACACAGCCGTCAAGGACGGTGTGTTGGGCGGTGGCGTTGGCGTCGTGGGAGGCGTGGCATGCGAGAAATTGGATCTGGGGAAGATGATTGAGGAGCTGGACTTGTCGGAGGTACCAAGCGTGTTCATATGCCCAATCTCCCTTGAAGCAATGCAAGACCCCGTCACACTCTGCACCGGTCAAACTTACGAGCGCTCCAACATCATGAAATGGTTCAGCATGGGTCACTTCACCTGCCCCACCACGATGCAGGAGCTTTGGGATGATTCCCTTACCCCCAACACCACCCTCTACCGCCTCATATACACTTGGTTCTCTCAGAAGTACCTTCTCATGAAGAAGAGGTCTGAGGATGTTCAGGGTAGGGCTTCCGAGCTTCTTGACACTCTCAAGAAGGTCAAGGGTCAGGCCCGTGTCATGGCTCTCAAGGAGCTTCACCACCTTGTTGCTGCTCACCCCACTGCCCGCAAGACTCTTCTCGATGAAGGTGGCGTAGCTATTATGTCTTCTTTGCTTGGACCTTTTACTTCCCATGCTGTTGGCTCTGAGGTTATTGCTATTCTTGTTTGCTTGACTCTTGATTCCGATTCCAAGAAGAATCTTATGCAGCCTGCTAAGGTTTCTTNNNNNNNNNNTGATATCCTCAATGAGGGCTCTATTGAGACCAAGATTAATTCCACTAGGTTGATTGAGTCACTGATTGATGACAAGGATCTTAGGTCCGAGCTTATCTCCAGCCATAGCTTGTTGGTTGGTTTGATGAGGCTTGTTAAGGATAAGAGGCACACCAATGGAATCTGCCCTGCCTTGAGCCTTTTAAGGGCAATTTGCTCCCACAAGGATATTAGGCATTTGATTGTCAGCATTGGTGCTGTTTCTCAATTGGTTGAATTGTTGTCTGGTTTGGAGCCTGATTGTTTGGAATTGGCACTTTCTATCTTGGATTCATTGGCGTCTATACCTGAAGGCAGGCTCGCGTTGAAGAATTGTTCTAATACCATACCCATCATGGTCAAATTGTTGATGAGGATCTCTGAGAATTGCACGCAGTATGCCTTGTCCATCTTGTGGTCTGTCTGCAAGCTTGCCCCAGAGGAGTGCTCCTCCGTTGCCGTGGACGCCGGGCTTGCTGCCAAACTCCTCCTTGTCATTCAGAGTGGTTGCAGTCCTATATTGAAACAACAGTCTGCTGAGCTTTTGAAGCTATGCAGTTTGAATTATTCGGATACAATCTTCATTTCCAAGTGCAAGCTCACAAGAACCATCCTATAG 1350 0.4844 MPMFQGCKRDMVAGYEGGGDGQILDLDTAVKDGVLGGGVGVVGGVACEKLDLGKMIEELDLSEVPSVFICPISLEAMQDPVTLCTGQTYERSNIMKWFSMGHFTCPTTMQELWDDSLTPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELLDTLKKVKGQARVMALKELHHLVAAHPTARKTLLDEGGVAIMSSLLGPFTSHAVGSEVIAILVCLTLDSDSKKNLMQPAKVSXXXXDILNEGSIETKINSTRLIESLIDDKDLRSELISSHSLLVGLMRLVKDKRHTNGICPALSLLRAICSHKDIRHLIVSIGAVSQLVELLSGLEPDCLELALSILDSLASIPEGRLALKNCSNTIPIMVKLLMRISENCTQYALSILWSVCKLAPEECSSVAVDAGLAAKLLLVIQSGCSPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIL 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271989g00009 449 SUPERFAMILY ARM repeat 151 435 IPR016024 -
Stsc271989g00009 449 PANTHER WDSAM1 PROTEIN 59 435 IPR045185 GO:0061630
Stsc271989g00009 449 SUPERFAMILY RING/U-box 58 134 - -
Stsc271989g00009 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 136 IPR013083 -
Stsc271989g00009 449 CDD RING-Ubox_PUB 65 117 IPR045210 -
Stsc271989g00009 449 Gene3D - 137 442 IPR011989 -
Stsc271989g00009 449 Pfam U-box domain 64 134 IPR003613 GO:0004842|GO:0016567
Stsc271989g00009 449 ProSiteProfiles U-box domain profile. 63 137 IPR003613 GO:0004842|GO:0016567
Stsc271989g00009 449 SMART Ubox_2 67 130 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271989g00009 Stsc-Chr271989 39929 42174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271989g00009 1 448 U-box Gene Family AT3G49810 73.438 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271989g00009 - - adu:107487639 805.053