Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271988g00007 ATGAGTGGAGCTCCATTAACAGGGTTGCAAGATCACCTCAAACTGGCAAGAGAATACGCACTCGAAGGACTCTACGACACCTCCATTATCTTCTTCGACGGCGCCGTTGCTCAGATCAACAAGCACCTTAACACCGTCGAGGATCCGTTAATCCGAGCGAAATGGATGAACGTCAAGAAAGCGCTGTCAGAGGAAACGGAAGTGGTGAAGCAGCTGGATGCGGAGAGAAGGGCATTTAAGGAAACTCCTATTGGCAATGGGAGGAGGCGCCCTGCTTCACCTCCAATATCGACCAAATCCTCCTTCGTTTTTCAGCCGTTGGATGAGTATCCAACTTCATCATCTGGCGGTCCAGGTGCTCCCTTCGACCACGATCCCGATGTGTGGAGGCCGCCCAGTCGAGATGACACTAGGGCTGGTGGCGGTAGAAGGCCCGCTATTTCCGCCCGTGGATCCACTCGAAAGTCCCAACCGGATGGGGCTTGGGCCCGTGGCGGCCCTACCAGGCCCACTGCGCGCGGTGCCAAGGCTGGTGGCGCCGCTGCTTCTAGGGTTAACTCCGGAGCCCGAGGAGCAACCGCTGCAAAGAAAGGCACTGCTTCTGGAAAGTCCAGCAAGTCCGATTCAGTTAATGGTGATGGTGATGATGGGAAGACAAAGAAGGGGCAGTATGAAGGTCCTGATCCTGACCTGGCTGAGATGCTCGAAAGGGACGTGTTAGAGACAACTCCCGGAGTGAGATGGGATGATGTTGCAGGCCTCACTGAAGCCAAGAGACTTCTTGAAGAAGCTGTTGTCCTTCCATTATGGATGCCAGAGTATTTCCAGGGAATTAGGAGACCATGGAAAGGTATTCTCATGTTCGGACCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCCACTGAATGTGGAACCACTTTCTTTAATGTTTCTTCAGCTACTTTAGCTTCTAAATGGCGTGGTGAGAGTGAACGCATGGTACGGTGTTTATTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGATGAAATTGACTCTCTGTGCAATGCTAGGGGGGCTTCTGGGGAACATGAATCATCCAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAACAATAGTTCCACAAATGAAGATGTTTGCATTACACATGATAGAAGCATGAGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGTATCAATTTGAAGACTGTCGAGGTGGCCGCCGATGTCAATATAGATGATGTGGCTCGCCGGACGGAAGGCTATAGTGGAGATGATTTGACAAACGTATGTCGTGATGCTTCCTTGAATGGTATGAGGCGAAAGATAGCAGGAAAGACGCGTGATGAGATAAAGAACATGCCCAAGGATGAGATTTCAAAGGATCCTGTGGCTATGTGTGATTTTGAAGAAGCTCTGAAGAAAGTCCAAAGAAGTGTTTCTCAGGCTGATATTGAACGGCATGAAAAGTGGTTTAATGAATTTGGATCAGCCTAA 1560 0.4897 MSGAPLTGLQDHLKLAREYALEGLYDTSIIFFDGAVAQINKHLNTVEDPLIRAKWMNVKKALSEETEVVKQLDAERRAFKETPIGNGRRRPASPPISTKSSFVFQPLDEYPTSSSGGPGAPFDHDPDVWRPPSRDDTRAGGGRRPAISARGSTRKSQPDGAWARGGPTRPTARGAKAGGAAASRVNSGARGATAAKKGTASGKSSKSDSVNGDGDDGKTKKGQYEGPDPDLAEMLERDVLETTPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGILMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSTNEDVCITHDRSMRRLEKRIYIPLPNFESRKELIRINLKTVEVAADVNIDDVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKVQRSVSQADIERHEKWFNEFGSA 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271988g00007 519 Gene3D - 4 80 - -
Stsc271988g00007 519 Pfam ATPase family associated with various cellular activities (AAA) 285 390 IPR003959 GO:0005524|GO:0016887
Stsc271988g00007 519 MobiDBLite consensus disorder prediction 93 112 - -
Stsc271988g00007 519 Pfam AAA+ lid domain 430 471 IPR041569 -
Stsc271988g00007 519 MobiDBLite consensus disorder prediction 209 230 - -
Stsc271988g00007 519 FunFam Katanin p60 ATPase-containing subunit A1 409 495 - -
Stsc271988g00007 519 Gene3D - 243 510 IPR027417 -
Stsc271988g00007 519 Gene3D - 409 495 - -
Stsc271988g00007 519 PANTHER AAA DOMAIN-CONTAINING 25 518 - -
Stsc271988g00007 519 FunFam Katanin p60 ATPase-containing subunit A1 243 420 - -
Stsc271988g00007 519 FunFam Katanin p60 ATPase-containing subunit A1 4 80 - -
Stsc271988g00007 519 CDD Kp60-NTD 9 75 - -
Stsc271988g00007 519 SMART AAA_5 281 410 IPR003593 GO:0016887
Stsc271988g00007 519 MobiDBLite consensus disorder prediction 127 141 - -
Stsc271988g00007 519 MobiDBLite consensus disorder prediction 79 230 - -
Stsc271988g00007 519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 516 IPR027417 -
Stsc271988g00007 519 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 519 IPR028596 GO:0008017|GO:0008568|GO:0051013
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271988g00007 Stsc-Chr271988 69583 72852 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271988g00007 237 511 Calmodulin-binding Proteins AT3G56690 37.631 4.03e-45 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271988g00007 K07767 - mnt:21402373 800.431