Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271987g00018 ATGGAAAAGGAACCTGAGTTCTCTGAATTTGTTGGTTCTGATTTTATACATCACAAGGATGCTGTCCCTGAGAAAAGAATACAGGAATTTGATGAGACCGTTGAAGGGACTGGAGACAAGGACAGGGAGTGTGTTGTCAATGATATTGTTCTGGGTGATATAGAAGAGACAATGGGAATAGAGGAAGTTGAGGATGCTTCAAGAACACTTCTTGAGGACAGGTGTAACGATGCAGATAAAGAGCAACAGAGGATAATGGATGAGTTGGAACTGGCTGTGAATGGAACACAAAATATCGTTTGTGATGGTGGTGTAATCTCTTTGGGTGCGGTGTCAGGTGAGAAACAGAATGACAGCAGGGTAGTTGAGTTGGTGGATTACCGATTGGAGAATGATGAATTCCTGCATTCTGATGTTAAAAAATGTGGTAATGCAGGTGAGATGCAAGTTCAAGGCTCGCGTGATCAAATTCTCTCAACATCAACACAAGAACAAACCTCTGCATTGGTAACTAGTACATCTAATATAAACCACGAGAATGAAATGAAAATGGTTTGTGCTGCAATGGATTCTCTCCCAAATTCGAAAGGTGAAGTTGGGAAGGTAGAGCAATGCTACTCAATGGTTGCTCAAGCATTGCATGTTTCTTCAGATAATATTACTAGTGAAACATTGAACATATGTGAAGATGAAAGGCTGCTAGATTATGATAATTTGGAAGATAAATGTGAAATGAAAAATGAAAGAAATTTAGAAAAGTCAACCTGTGCAAAGAATCCATCTATTTCGTCAAATATTCTGATTGAAAATGAAGACCTAGAAGAGGGAGAACTAGTTGGAGACATAGGAGTGGATCCTAATTCATTTGGCATACCTTCTACAGATTCCTTTATTCCTCAAATGAAAATTAATGAGAATATGGGGAATGCAGAAAAAGAAGGCTTAGACAAACAAATAGGTAGTAAACCGGTTACCGACTTGCCAATAAATTATGTTCAAAATCAAGTGTTGCACAAACGCAAATTGGAAGATGACTCTGACCATGATCATGGGAACCCAGTTGCATCAAAGAAGGCTGATGTCAGCTGCAAGAAAAAGCGTGGCCCTGGTTCTGCGGAAAAGAAAGCGAAAAAGAAGAAAAAACAGAGGAAAAAACGGGCAGAAAAGAACAAGCAACTTGGTGTGAAAAGGTTGAAGTTGCCTCTAGTACAACAGAAACCAAAAACTATCAATTATTGTCGCCATTTTCTTGTAGGAAGATGCTATGAGGGTGACAAGTGCCAGTTTTCACATGATACAGTGCCTTCTACCAAATCATCGCCATGCTCCTTTTTTGCTCGTCACTCCTGCATGAAAGGAGACGACTGTCCTTTTGATCATCAACTTTCCAAGTATCCTTGTGATAACTTTGTGTCCAGAGGCTTTTGTGCCAGAGGTGATGCGTGTTTGTTTTCACACAAGTTACCAGCCAAGGAAGACATTCGTACACCTTCAAAGGATTGCAAACCAGGAATGAAATCACCACACTTTTCAGGAAACACAAATTTCAACATGCCACCTAACATTAATGGCTATAGTTCTATCCAACAGAACCATTTAATCAATTCTCCAAGAGTTCTTTCTCAAATCAATTTGGAACATAAAGTGACAAACACTCTGCAGAAACAGCCTAAGCTTGCATCTAAAGGAGTTAGCTTCATCGACGTTGCAAAGCTATCATCGCCTGCTCCTACTACACCAAAAGAAGGCATGACCAAAGTTGGCTCATCCTATGCTGACCAAAGTACATCTGGAACTAATCAAACCTCGGTGGAAATTCCTAAGAAATTGTCAGCTAGGGTTCCGAAGGGAATTAACTTTCTTGCTTTTGGGAAAGATCCTGTGAACAGTTTTAAGAGTTCTTTCAAGTCCCTTGTAAATGCGGAAAATGGTATTGATGTGCTCCCGAATATAAATTTCAGTTTGCTTGATCATAATAATTCATCCATAAAAGTGGATGATGGCAGCAAAGCTATTGATGGAACAAAAGGAGGGGTACCAAAGACTGATTTAGTCTCCGGTGAGACTTTCGAGAAAAATAAATCCGTGGCAGAAAGTATAAAATTGAGTTTTCCGGGGAAAGCATCGATGACTGATACTTCAACTGGGTTACAAGGTATCCCTCGTGTGAATGATAATGAAAGTAAACCGGTAGGAGAAGCAAAAGGGGCAACTGATCTTTTTCAAACTTCTGCATCGACGCCATTTATGCGTCTGGTTTCTCCTTTATCTTCAGAACAGCTACCATCTAGAAAGGAGCTTATGTCGACTTTATTATCATTTGCATCAGGGCATGAATTAGTTATCAAGAAGAAAGATTCTGCTGGTACTTCAACCGCATAA 2382 0.398 MEKEPEFSEFVGSDFIHHKDAVPEKRIQEFDETVEGTGDKDRECVVNDIVLGDIEETMGIEEVEDASRTLLEDRCNDADKEQQRIMDELELAVNGTQNIVCDGGVISLGAVSGEKQNDSRVVELVDYRLENDEFLHSDVKKCGNAGEMQVQGSRDQILSTSTQEQTSALVTSTSNINHENEMKMVCAAMDSLPNSKGEVGKVEQCYSMVAQALHVSSDNITSETLNICEDERLLDYDNLEDKCEMKNERNLEKSTCAKNPSISSNILIENEDLEEGELVGDIGVDPNSFGIPSTDSFIPQMKINENMGNAEKEGLDKQIGSKPVTDLPINYVQNQVLHKRKLEDDSDHDHGNPVASKKADVSCKKKRGPGSAEKKAKKKKKQRKKRAEKNKQLGVKRLKLPLVQQKPKTINYCRHFLVGRCYEGDKCQFSHDTVPSTKSSPCSFFARHSCMKGDDCPFDHQLSKYPCDNFVSRGFCARGDACLFSHKLPAKEDIRTPSKDCKPGMKSPHFSGNTNFNMPPNINGYSSIQQNHLINSPRVLSQINLEHKVTNTLQKQPKLASKGVSFIDVAKLSSPAPTTPKEGMTKVGSSYADQSTSGTNQTSVEIPKKLSARVPKGINFLAFGKDPVNSFKSSFKSLVNAENGIDVLPNINFSLLDHNNSSIKVDDGSKAIDGTKGGVPKTDLVSGETFEKNKSVAESIKLSFPGKASMTDTSTGLQGIPRVNDNESKPVGEAKGATDLFQTSASTPFMRLVSPLSSEQLPSRKELMSTLLSFASGHELVIKKKDSAGTSTA 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271987g00018 793 ProSiteProfiles Zinc finger C3H1-type profile. 466 489 IPR000571 GO:0046872
Stsc271987g00018 793 MobiDBLite consensus disorder prediction 577 604 - -
Stsc271987g00018 793 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 66 635 IPR045124 GO:0003723|GO:0045892
Stsc271987g00018 793 Pfam CCCH-type zinc finger 413 432 IPR041367 -
Stsc271987g00018 793 ProSiteProfiles Zinc finger C3H1-type profile. 436 463 IPR000571 GO:0046872
Stsc271987g00018 793 MobiDBLite consensus disorder prediction 342 394 - -
Stsc271987g00018 793 MobiDBLite consensus disorder prediction 342 369 - -
Stsc271987g00018 793 MobiDBLite consensus disorder prediction 578 604 - -
Stsc271987g00018 793 MobiDBLite consensus disorder prediction 370 392 - -
Stsc271987g00018 793 ProSiteProfiles Zinc finger C3H1-type profile. 407 434 IPR000571 GO:0046872
Stsc271987g00018 793 SMART c3hfinal6 408 433 IPR000571 GO:0046872
Stsc271987g00018 793 SMART c3hfinal6 436 462 IPR000571 GO:0046872
Stsc271987g00018 793 SMART c3hfinal6 464 488 IPR000571 GO:0046872
Stsc271987g00018 793 Gene3D - 402 464 - -
Stsc271987g00018 793 SUPERFAMILY CCCH zinc finger 407 432 IPR036855 GO:0046872
Stsc271987g00018 793 Coils Coil 372 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271987g00018 Stsc-Chr271987 91471 96057 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc271987g00018 zf-CCCH_4 3.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271987g00018 - - adu:107464618 1011.13