Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271986g00008 ATGATTGTTGGAGGGGAGAAAATTTCTATGGTTGAGGGGAAAGATGTTGAGGGGGAAGTGAATATTCGGAAAGTTAAGAGAAAGAGAAGGAGGAAAAGGCGAAGGGATAATGTGGATCATGATGATGCTTCGCGCCTGCAGAGGAGAACAAGGTATCTGTTAATCAGAATGAAGGTAGAGCAGAACCTTTTAGATGCATACTCTGGAGAAGGATGGAAAGGTCAAAGCCGAGAAAAGATTAGACCGGAGAAGGAACTACAAAGAGCAAAGAAACAGATTTTAAAATGTAAACTTGGTATCCGTGACGTCATTTGCCAGTTGGATACTCTTAGTTCTGTGGGCAGGATGGAAGATTCTGTCATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCTAAGTGCAAGTTGCCTGAAGCATTCCCCGATAACGATATTATACTCTGTGATGGCACATGCAATCGTGCTTTTCACCAAAGATGTCTCGACCCACCATTGGACACTGAAAATATTCCTCCTGGAGACCAAGGCTGGTTTTGCAAGCTTTGTGAATGTAAGATGGAAATACTCGAGGCAACGAATGCTCATCTTGGGACCAACTTCTCCTTTGACAGTACATGGCAGGATGTATTCAAGGAAGAAGCTGCTTTACCCAATGATGATGCCGCTTTACTAAATCCGGAGGAAGAATGGCCATCAGATGATCCTGAAGATGATGATTACAACCCGGACAGGAGAGACAACTCTCACAACATCAATGCAGAAGGCACTGATGATAATCCATCCGATTCAAGCAGCTCTACCAGTCTCTGGTCCTTAAACGATGAATATTCTCCTGTAGACAAAGCTTTGAGCCTTGAATTTCTTTCTGTTAATAGCTGCATAGATTCTGAAGGATCCGGGGAGATAGTATGTGGCCGCAGGCAGCGTAAAGCAGTTGACTACAGAAAACTTTATGATGAAATGTTTAAGGATGCTCCTCCATGTGAACAAGTGAGTGACGATGAAGATTGGGGTCCGGGAAAAAGAAAGCGGAGAGAAAAGGAATCTGATGCAGCTAATACACTTATGACACTGCATGAAAGCGATAATAAATATCCTACTAATGAGAGCAATGATACAATAAGAGAGGATGAACACATACATATAAAAAGATCTTGCTTCAGAATTCCACATGATGCAGTTGAGAAGCTTCGCCAAGTTTTCGCAGAGAATGAACTTCCTCCAAAATCCGTGAAGGAACGCCTTTCAAAAGAGTTGGGAATAGATGCTGCGAAGGTTAGCAAGTGGTTCAAAAATGCTCGTTACTCAGCTCTTAAAACCAGGAAGCATCAAGTGGAAGGAGGAGAACCGCCCCCGCCGAGTTTGTGTAAGACCTCAAAGGATTCCGGTTCTGAAAATGGGGACAAAGATGAGCTCCTGTGGAAATCAAAGGCCTCTAAAATTACCATGATTCGAACCGGTAGGAAGAAAATGAAGTCATCTGGGAGTCTTCGGAAGAAGAGGCAACTGGAAATATCTCCGGCCAAGACAGCAGAAAATGGCAACAAGGACTTGGAAGAAGTCAGTGATGATGTTGGCTTGAAGAAGCTGTTGCAAGAAAGAAAAAGGAAAATAGACATTGTATTTGGAGGAGATTCTAAGGCAGCAGAGTTGGAATTTGAAAGACTTTGCAAATTGAAGGATAAACTAGATAAAATGAAGGTTAAGTTAATCAAATTTCAAAACCAGAGAGCAAAAGGACATGTAAGTAGAGGCTCTTGCACACTTCCCCCCGCCGCCGCCGCAGCATCCTTCACAGCTGTAGTCTCCCGGAAGAAGCTCCACGACTACGGAAACAGCACCCAGTTATTGTTTATGGAGCCAAAAAATGAGCAGCCAAATTCAGCCAGAGGATCAGATTCTTCTTCAAAGAAGGCAAAGGATCTGAATATTGAGGGATACCCAGTTGGGGGTCTGTCCATTGGAGGGCATGAAACTTGCATCATATTTCCCACACTTAAAGTAGCCTTTGATATCGGTCGCTGCCCGCCTCGCGCCGTTTCCCAAGACTTTCTGTTGATCTCCCATGCTCACATGGATCACATAGGAGGACTGCCGATGTATGTTGCCACACGTGGCCTGTACCGTATGAAGCCACCAACAATTATTGTACCAATTTCGGTAAAAGAAGATGTCGAGAAACTCTTTGAAGTCCACAGGAAAATGGACCATTCAGAGCTTAACCACAACTTGATTGGGTTAGATGTAGGAGAGGAGTTTTATATGAGAAAAGATCTTAAAGTAAAAGCTTTTCGGACTTACCATGTTATACCCAGCCAGGGTTATATACTTTACTCTGTAAGGCAGAAACTTAAACCGGAGTACATTGGTCTTTCCGGAAATGAAATTAAGAATTTGAAGTCTTCTGGTGTGGAGATAACAAACACTTTGACGGAACCTGAAATCGCATTCACGGGAGACACCATGTCAGATTTCATAGTTGATGAAAATAACACTGATGTTTTGCGGGCTAGAATTCTCGTCGTAGAGTGCACCTTTGTGAACAATTCGATCACTGTGGAGCATGCCAAAGATTATGGACACACGCATCTGTCCGAGATAATCAGTTATGCAGAGCAGTTAAAGAACAGAGCAATCCTCTTGATTCACTTTTCAGCGCGTTACACAGTCGAGGAAATTGAACAAGCTTTAAGTGGTTTGCCACCACCTCTAGCCGGTCGAACTTTTGCACTCACCGAAGGTTTCTGA 2757 0.4327 MIVGGEKISMVEGKDVEGEVNIRKVKRKRRRKRRRDNVDHDDASRLQRRTRYLLIRMKVEQNLLDAYSGEGWKGQSREKIRPEKELQRAKKQILKCKLGIRDVICQLDTLSSVGRMEDSVIAPDGSVYHEHIFCAKCKLPEAFPDNDIILCDGTCNRAFHQRCLDPPLDTENIPPGDQGWFCKLCECKMEILEATNAHLGTNFSFDSTWQDVFKEEAALPNDDAALLNPEEEWPSDDPEDDDYNPDRRDNSHNINAEGTDDNPSDSSSSTSLWSLNDEYSPVDKALSLEFLSVNSCIDSEGSGEIVCGRRQRKAVDYRKLYDEMFKDAPPCEQVSDDEDWGPGKRKRREKESDAANTLMTLHESDNKYPTNESNDTIREDEHIHIKRSCFRIPHDAVEKLRQVFAENELPPKSVKERLSKELGIDAAKVSKWFKNARYSALKTRKHQVEGGEPPPPSLCKTSKDSGSENGDKDELLWKSKASKITMIRTGRKKMKSSGSLRKKRQLEISPAKTAENGNKDLEEVSDDVGLKKLLQERKRKIDIVFGGDSKAAELEFERLCKLKDKLDKMKVKLIKFQNQRAKGHVSRGSCTLPPAAAAASFTAVVSRKKLHDYGNSTQLLFMEPKNEQPNSARGSDSSSKKAKDLNIEGYPVGGLSIGGHETCIIFPTLKVAFDIGRCPPRAVSQDFLLISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPISVKEDVEKLFEVHRKMDHSELNHNLIGLDVGEEFYMRKDLKVKAFRTYHVIPSQGYILYSVRQKLKPEYIGLSGNEIKNLKSSGVEITNTLTEPEIAFTGDTMSDFIVDENNTDVLRARILVVECTFVNNSITVEHAKDYGHTHLSEIISYAEQLKNRAILLIHFSARYTVEEIEQALSGLPPPLAGRTFALTEGF 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271986g00008 918 FunFam pathogenesis-related homeodomain protein-like 125 185 - -
Stsc271986g00008 918 SMART PHD_3 133 186 IPR001965 -
Stsc271986g00008 918 MobiDBLite consensus disorder prediction 490 520 - -
Stsc271986g00008 918 SUPERFAMILY Homeodomain-like 382 446 IPR009057 -
Stsc271986g00008 918 MobiDBLite consensus disorder prediction 226 272 - -
Stsc271986g00008 918 Gene3D - 652 904 IPR036866 -
Stsc271986g00008 918 MobiDBLite consensus disorder prediction 621 636 - -
Stsc271986g00008 918 ProSiteProfiles 'Homeobox' domain profile. 383 443 IPR001356 GO:0003677
Stsc271986g00008 918 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 23 588 - -
Stsc271986g00008 918 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 182 IPR013083 -
Stsc271986g00008 918 CDD homeodomain 386 447 IPR001356 GO:0003677
Stsc271986g00008 918 MobiDBLite consensus disorder prediction 621 642 - -
Stsc271986g00008 918 MobiDBLite consensus disorder prediction 443 474 - -
Stsc271986g00008 918 CDD PHD_PRHA_like 133 185 IPR045876 -
Stsc271986g00008 918 ProSiteProfiles Zinc finger PHD-type profile. 131 188 IPR019787 -
Stsc271986g00008 918 CDD RNaseZ_MBL-fold 645 847 - -
Stsc271986g00008 918 Pfam Homeodomain 394 438 IPR001356 GO:0003677
Stsc271986g00008 918 SMART HOX_1 385 447 IPR001356 GO:0003677
Stsc271986g00008 918 MobiDBLite consensus disorder prediction 229 243 - -
Stsc271986g00008 918 Pfam PHD-finger 133 188 IPR019787 -
Stsc271986g00008 918 Pfam Beta-lactamase superfamily domain 684 887 IPR001279 -
Stsc271986g00008 918 SUPERFAMILY Metallo-hydrolase/oxidoreductase 662 904 IPR036866 -
Stsc271986g00008 918 Gene3D - 385 449 - -
Stsc271986g00008 918 FunFam pathogenesis-related homeodomain protein 385 449 - -
Stsc271986g00008 918 MobiDBLite consensus disorder prediction 256 272 - -
Stsc271986g00008 918 MobiDBLite consensus disorder prediction 23 42 - -
Stsc271986g00008 918 MobiDBLite consensus disorder prediction 329 355 - -
Stsc271986g00008 918 SUPERFAMILY FYVE/PHD zinc finger 125 191 IPR011011 -
Stsc271986g00008 918 ProSitePatterns Zinc finger PHD-type signature. 134 185 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271986g00008 Stsc-Chr271986 41837 51092 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271986g00008 33 468 Homeobox Transcription Factor Family AT4G29940 55.654 1.23e-147 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Stsc271986g00008 Lactamase_B_2 1.6e-13 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271986g00008 - - gmx:100787118 760.37