Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271986g00002 ATGGAGAATATAGGTGATGAGTACAATCATTATTGGGAGACAAATATGTTCCTCCAAACCCAAGAACTCGACAACCATGGCAGCTGGGGTTTGGATGAGGCGTTATCAGGATACTACGATTCGAGCTCGCCGGACGGCGCGGCTTCGTCGGCGGCGTCCAAGAATATTATGTCGGAGAGGAATCGGAGGAAGAAGCTCAATGAAAGGCTTTTCGCACTTAGATCAGTGGTCCCCAACATCAGCAAGATGGATAAGGCTTCAATAATAAAAGATGCAATTGAGTACATACAAAAGTTACAGGAGCAAGAGAGGATTATTAAATCAGAGATAGTTGAGCTTGAGAGCAGTGGGATGATGATGATGGAGAAGAAGAACCCTAGTAGCTGTGAATTTGATCATCATCATCATCAAGAACTTCCAGTGTTGTTGAGGTCCAAGAAGAAAAGAACAGATGAGCTTTATGATTCTCTCAATTCTAGAAACTCCCCTATTCATATACTTGAGCTGAGGGTAACATACATGGGAGAGAGGACAATAGTGGTAAGCTTGACATGCAGTAAAAGGACAGATACAATGGTGAAATTGTGTGAAGTTTTTGAGTCACTGAAGCTCAAGATCATCACTGCCAATATCACTTCCCTTTCCTCTGCCAGGCTTTTGAAGACAGTCTTCATTGAGGCAGATGAAGAAGAGAAAGACCTTTTGCAGATAAAGATCCAAACAGCAATTGCAGCTCTAAATGACCCTCTAAGTCCTATGAGCATTTGA 768 0.4258 MENIGDEYNHYWETNMFLQTQELDNHGSWGLDEALSGYYDSSSPDGAASSAASKNIMSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIQKLQEQERIIKSEIVELESSGMMMMEKKNPSSCEFDHHHHQELPVLLRSKKKRTDELYDSLNSRNSPIHILELRVTYMGERTIVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSLSSARLLKTVFIEADEEEKDLLQIKIQTAIAALNDPLSPMSI 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271986g00002 255 Gene3D - 47 116 IPR036638 GO:0046983
Stsc271986g00002 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 99 IPR011598 GO:0046983
Stsc271986g00002 255 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 46 240 - -
Stsc271986g00002 255 Coils Coil 96 116 - -
Stsc271986g00002 255 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 46 116 - -
Stsc271986g00002 255 Pfam Helix-loop-helix DNA-binding domain 55 100 IPR011598 GO:0046983
Stsc271986g00002 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 117 IPR036638 GO:0046983
Stsc271986g00002 255 SMART finulus 56 105 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271986g00002 Stsc-Chr271986 4686 11542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271986g00002 1 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 59.912 1.36e-82 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc271986g00002 HLH 3.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271986g00002 - - aip:107639158 390.193