Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271985g00022 ATGTCATGCATTGTTTCTGACCCTGAAAATGCTCTAGAGAGTTGGAAGTCACCTAATAATGTTCATGTCTGTGATTGGTCAGGTGTGAAGTGCAACAATGCAAGTGATAGGATCATAGAGCTTGACCTTAGTGAAAGGTCCTTAGGGGGAACCATTTCTCCTTCACTTGGAAACCTCTCTTCCTTGAAAATTCTTGATCTTTCAGGAAACTTTTTTGTAGGTCACATTCCAAAAGAGCTAGGCTACTTAATTCACCTGAGACAGTTAAGTTTGTCTGGGAATTTTCTTGAAGGTGTCATTCCTTCAGAGTTTGGTTTGCTTCACAACTTGGACTACCTTGACATGGAAAGCAATAACCTTGGTGGAGAAATTCCACCATCACTTTTCTGCAATGGAAGTTCACTTAGCTATATAGACCTCTCCAATAACTCCTTAGGGGGGTTTATCCCTTTGAGCAATGAGTGTGTCCTTAAAGAACTTAGGTTCTTCTTGCTTTGGTCTAATCATTTTGTTGGCCAAGTTCCCTTATCTCTTTCAAACTCCACTCAACTTAAATGGCTTGATTTGGAGTCAAATAAGTTGAGTGGAGAGCTTCCATCTCAGATAATACACAGTTGGCCACAGTTACAGTTCCTCTACCTGTCATATAATGACTTTGTTAGCCATGATGGTAACACCAACCTTGAACCTTTCTTTGCTTCCTTGATGAACTTGTCTAGATTTCAAGAACTCGAATTAGCTGGAAACCGTCTCGGCGGGAAGCTACCTCATATTATTGGTGATCTTCCTGCTACTATGCAACAGCTTCATCTAGAAGGAAATCTCATACATGGTCCTATACCTCCACACATTTCCAACCTTGTCAACTTAACTTTCTTGAATCTGTCTAGTAATCAGATAAATGGATCAATCCCTTCTAGTCTCTGCCGCATGATTAGGCTAGAGAGAGTTTATCTGTCAAATAACTCATTGCATGGTGAGATTCCATCAGCACTTAGTGATATCAAACACCTTGGCCTTCTAGATTTGTCAAGAAACAAGCTTTCAGGTTCAATACCAGATAGTTTTGCCAACCTGCCTCAGTTAAGAAGGCTTTTGCTTTATGACAACCAGCTTTCCGGGAAAATCCCACCAAGCCTTGGAAAATGTGTCAACTTGGAGATTCTGGACTTATCTCACAACAAGATTTCAGGACAGGTTCCTGCAGAAGTTGCAGCTTTGACTAGCTTGAAACTCAAAATGGATATGGTGCTAGCTATTGATCTTTCCATGAACAATCTCTCTGGAAGAATCCCACCACAGCTTGATAGTTGCATAGCACTAGAGTACCTCAACCTCTCTGGTAACTCCTTAGAAGGCCCTCTCCCTTATTCATTAGGCCAATTGCCTTATCTTGAAGCACTTGATGTGTCTTCAAACCAGTTGAGAGGAGTAATACCAGTGTCTCTGCAGTTATCTTCTTCCCTCAAAACACTCAACTTATCCTTCAATAAATTCTCAGGAAAGATCTCAAACAAGGGAGCATTTTCATATCTGACCATGGATTCTTTCCTAGGAAATGATGGTCTTTGTGGCACAGTAATTGGCATGGAGAGCTGCCATAAGAAACACAGCTACCATTTGGTGTTCTTATTGATTCCTGTGTTACTATTTGCCACACCTCTTCTCTGCATGTTTAGGTACTCCATGGTAATCAAGTCAAGAGCGAGAAAGCGATTCGCAATTGCTAACAAGGGAGACTTGAGGGATGAGGAAGAGGAAGCAGAAGAGCTCCATTATCCAAAGATTTCATATCAAAATCTTAGAGAAGCCACAGGAGGCTTCAGTTCCTCGAGGCTAATCGGTTCTGGCCGGTTCGGACAAGTCTACAAAGGAGTCCTCTTAGATAACACAAGAGTAGCAGTGAAGGTACTAGATACAGCAACAGCTGCTGATATCTCATGGAGCTTCAAGAGGGAATGCCAAATCATTAGAAAGATTAGGCACAGGAACTTAATAAAGATCATTACAATTTGTAGTAAACCAGGATTTAAGGCTCTTGTGCTTCCTCTTATGCCAAATGGTAGTCTTGAGAGGCACTTATATCCAAGCCATGGGTTAAGCCAAAGGTTGGATGTTGTTCAGCTAGTGAGGATATGCAGTGATGTAGCTGAGGGAATGTCCTATCTACACCATTACTCCCCGGTTAAAATCGCGCATTGTGATCTTAAGCCGAGCAATATACTCCTTGATGAGGATATGACTGCTTTGGTTACTGATTTCGGAATTGCAAAGCTTGTAAAAGGAGATGATACTTCCTCCACAAGTTACTCAGCAGCATCTTTCAGCTCAACACAAGGCTTGTTATGTGGCTCTCTTGGATATATAGCTCCTGAATATGGCATGGGAAAACATGCTTCAACTCAAGGTGATGTGTACAGTTTTGGAGTGGTTCTGTTAGAAATCGTTGCGGGGAGACGCCCCACGGATGTACTCATCCATGAAGGATCTAGCTTGCATGAGTGGGTTAAGAGACAATACACAAACCAAGAAAAGCTTGGAAAATTGGTTGAAGAAGCATTGCAAAGATACTCTTCTTGTTTGCCAAGTCACCATAACAGAATAAGGAAAGATGTTATACTTGAACTTGTGGAATTGGGACTAATCTGCACACAGCAGAATCCTTCAACAAGACCAACCATGATGGATGTAGCACAAGAGTTGGGAAGGTTAAAGGACTACCTCACTATTCCAAATTCTTCATGCAGAGCAGAAAATTCAGTCAAATAG 2769 0.4157 MSCIVSDPENALESWKSPNNVHVCDWSGVKCNNASDRIIELDLSERSLGGTISPSLGNLSSLKILDLSGNFFVGHIPKELGYLIHLRQLSLSGNFLEGVIPSEFGLLHNLDYLDMESNNLGGEIPPSLFCNGSSLSYIDLSNNSLGGFIPLSNECVLKELRFFLLWSNHFVGQVPLSLSNSTQLKWLDLESNKLSGELPSQIIHSWPQLQFLYLSYNDFVSHDGNTNLEPFFASLMNLSRFQELELAGNRLGGKLPHIIGDLPATMQQLHLEGNLIHGPIPPHISNLVNLTFLNLSSNQINGSIPSSLCRMIRLERVYLSNNSLHGEIPSALSDIKHLGLLDLSRNKLSGSIPDSFANLPQLRRLLLYDNQLSGKIPPSLGKCVNLEILDLSHNKISGQVPAEVAALTSLKLKMDMVLAIDLSMNNLSGRIPPQLDSCIALEYLNLSGNSLEGPLPYSLGQLPYLEALDVSSNQLRGVIPVSLQLSSSLKTLNLSFNKFSGKISNKGAFSYLTMDSFLGNDGLCGTVIGMESCHKKHSYHLVFLLIPVLLFATPLLCMFRYSMVIKSRARKRFAIANKGDLRDEEEEAEELHYPKISYQNLREATGGFSSSRLIGSGRFGQVYKGVLLDNTRVAVKVLDTATAADISWSFKRECQIIRKIRHRNLIKIITICSKPGFKALVLPLMPNGSLERHLYPSHGLSQRLDVVQLVRICSDVAEGMSYLHHYSPVKIAHCDLKPSNILLDEDMTALVTDFGIAKLVKGDDTSSTSYSAASFSSTQGLLCGSLGYIAPEYGMGKHASTQGDVYSFGVVLLEIVAGRRPTDVLIHEGSSLHEWVKRQYTNQEKLGKLVEEALQRYSSCLPSHHNRIRKDVILELVELGLICTQQNPSTRPTMMDVAQELGRLKDYLTIPNSSCRAENSVK 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271985g00022 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 731 743 IPR008271 GO:0004672|GO:0006468
Stsc271985g00022 922 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 685 913 - -
Stsc271985g00022 922 Gene3D Ribonuclease Inhibitor 332 414 IPR032675 -
Stsc271985g00022 922 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 234 901 - -
Stsc271985g00022 922 Gene3D Ribonuclease Inhibitor 224 331 IPR032675 -
Stsc271985g00022 922 Gene3D Ribonuclease Inhibitor 415 534 IPR032675 -
Stsc271985g00022 922 Pfam Leucine rich repeat 61 120 IPR001611 GO:0005515
Stsc271985g00022 922 Pfam Leucine rich repeat 441 499 IPR001611 GO:0005515
Stsc271985g00022 922 Pfam Leucine rich repeat 313 372 IPR001611 GO:0005515
Stsc271985g00022 922 ProSiteProfiles Protein kinase domain profile. 608 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271985g00022 922 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 30 235 - -
Stsc271985g00022 922 Gene3D Transferase(Phosphotransferase) domain 1 685 916 - -
Stsc271985g00022 922 Pfam Leucine Rich repeat 383 398 IPR001611 GO:0005515
Stsc271985g00022 922 Pfam Leucine Rich repeat 289 303 IPR001611 GO:0005515
Stsc271985g00022 922 CDD STKc_IRAK 614 904 - -
Stsc271985g00022 922 SMART LRR_typ_2 462 485 IPR003591 -
Stsc271985g00022 922 SMART LRR_typ_2 335 358 IPR003591 -
Stsc271985g00022 922 SMART LRR_typ_2 287 311 IPR003591 -
Stsc271985g00022 922 SMART LRR_typ_2 59 81 IPR003591 -
Stsc271985g00022 922 SMART LRR_typ_2 83 106 IPR003591 -
Stsc271985g00022 922 SMART LRR_typ_2 107 131 IPR003591 -
Stsc271985g00022 922 SMART LRR_typ_2 182 205 IPR003591 -
Stsc271985g00022 922 SMART LRR_typ_2 359 383 IPR003591 -
Stsc271985g00022 922 SMART LRR_typ_2 384 407 IPR003591 -
Stsc271985g00022 922 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 236 537 - -
Stsc271985g00022 922 SMART serkin_6 608 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271985g00022 922 Pfam Leucine rich repeat N-terminal domain 6 32 IPR013210 -
Stsc271985g00022 922 SUPERFAMILY Protein kinase-like (PK-like) 590 901 IPR011009 -
Stsc271985g00022 922 Gene3D Phosphorylase Kinase; domain 1 579 683 - -
Stsc271985g00022 922 Gene3D Ribonuclease Inhibitor 2 152 IPR032675 -
Stsc271985g00022 922 ProSiteProfiles Leucine-rich repeat profile. 289 311 IPR001611 GO:0005515
Stsc271985g00022 922 SUPERFAMILY L domain-like 234 517 - -
Stsc271985g00022 922 SUPERFAMILY RNI-like 39 310 - -
Stsc271985g00022 922 Gene3D Ribonuclease Inhibitor 153 223 IPR032675 -
Stsc271985g00022 922 ProSitePatterns Protein kinases ATP-binding region signature. 614 636 IPR017441 GO:0005524
Stsc271985g00022 922 Pfam Protein kinase domain 609 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271985g00022 922 PRINTS Leucine-rich repeat signature 462 475 - -
Stsc271985g00022 922 PRINTS Leucine-rich repeat signature 386 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271985g00022 Stsc-Chr271985 93555 96495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271985g00022 2 906 Receptor kinase-like Gene Family AT3G47570 36.364 7.66e-162 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc271985g00022 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271985g00022 - - gmx:100792446 1377.46