Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271985g00017 ATGGAAGCCAGCGCCGGACTCGTCGCTGGCTCGCACAACCGCAATGAGCTTGTTGTCATTCATGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGTCAAGTGTGTGAGATATGTGGGGATGAGGTGGGACTCACGGTGGATGGAGACTTGTTTGTGGCCTGCAATGAGTGTGGTTTTCCGGTGTGCCGGCCGTGCTATGAGTATGAAAGGAGGGAAGGCAGCCAGCTTTGTCCACAGTGCAAAACCAGATACAAGCGTCTCAAGGGGAGTCCGAGGGTCGAGGGAGATGAAGATGAGGAGGATGTGGATGATATTGAACATGAATTTAACATCGAAGACGAAAGGAACAGGCATGATCATTCTGCAGAATCCATGCTGTATGGGAAGATGAGCTATGGAAGAGGTCCTGAAGATGAAGAAAATGCTCAATTCCCACCTGTCATTTCTGGTGGTAGATCTCTGCCTGTGAGTGGAGAGTTATCAGCAGTTGGATCTCATGCTTATGGGGAGATGTTATCTTCAACATTGCACAAAAGAGTGCATCCATATCCAGTGTCTGAACCTGGAAGTGAAAGATGGGATGATAAGAAAGATGGATGGAAAGAAAGAATGGATGACTGGAAACTTCAACAAGGCAATTTGGGCCCTGAACCTGATGAAGATTTTGATGCAGCCTTGTTAGATGTAACAAGGCAACCACTATCAAGGAAAGTACCAATTGCATCTAGCAAAGTGAATCCATATAGGATGGTGATTGTGGCGCGGCTTGTTATTCTTGCGTTCTTCCTAAGATATCGAATTCTGAACCCGGTTCATGATGCATTCGGGCTATGGCTAACTTCCATTATATGTGAAATCTGGTTTGCTTTTTCATGGATCCTTGATCAGTTCCCCAAATGGTTCCCAATTGATAGAGAGACCTACCTTGACCGTCTTTCGATCAGGTATGAGCGTGAAGGTGAACCAAACATGCTTGCTCCTGTAGATGTGTTTGTGAGTACTGTGGACCCTATGAAGGAACCTCCACTTGTTACAGCAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCTGTTGACAAGATATCATGCTACATCTCTGATGATGGTGCTTCAATGTGTACATTTGAATCCTTGTCAGAAACTGCAGAGTTTGCTAGGAAATGGGTACCATTTTGCAAGAAATTTTCGATAGAACCTCGAGCACCAGAGATGTACTTCTCTGAGAAAATTGACTACCTCAAGGACAAAGTGCAGCCCACCTTTGTTAAGGAGCGGCGAGCGATGAAGAGAGAATATGAAGAGTTTAAGGTGAGGATCAATGCACTTGTGGCTAAAGCACAGAAGGTTCCTCCAGGAGGGTGGATCATGCAGGATGGGACACCATGGCCAGGAAACAATACCAAGGATCATCCTGGTATGATTCAAGTCTTTCTTGGCCACAGTGGAGGCCATGACACCGAAGGAAACGAGCTCCCTCGCCTTGTCTATGTCTCCCGTGAGAAAAGGCCTGGTTTTCAGCACCACAAGAAAGCTGGTGCCATGAATGCTCTGATTCGGGTGTCTGCTGTGCTTACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCACTATGTTAATAACAGCAAAGCTGTCCGAGAGGCCATGTGCTTCTTAATGGACCCCCAAACTGGGAAGAAAGTCTGCTATGTCCAATTTCCTCAGAGATTTGATGGTATTGATACTCATGATCGGTATGCTAACAGGAACACAGTTTTCTTTGATATTAACATGAAGGGACTAGATGGAATTCAGGGTCCTGTATATGTGGGCACAGGTTGTGTATTCAGGAGGCAAGCTTTATATGGATACAATCCTCCAAAGGGTCCTAAGCGTCCAAAAATGGTGAGTTGTGACTGTTGCCCTTGCTTCGGAAAGCGTAAGAAGGCAAAGCATGCAAAGAATGATGCAATTGCAGAGGCTGCAAACCTTAAAGCAATGGAAGATGACAAAGAGTTACTGATGTCCCAAATGAATTTTGAGAAGAAATTTGGACAATCATCTATTTTTGTGACTTCAACTTTGATGGAAGATGGTGGTGTACCTCCTTCTTCAAGTCCTGCAAGCCAGCTTAAAGAAGCCATTCATGTAATCAGCTGTGGCTATGAAGATAAAACCGAATGGGGAATTGAGCTAGGTTGGATCTATGGTTCCATTACAGAGGATATTCTAACAGGTTTCAAGATGCATTGCCGTGGTTGGAGATCCATTTACTGCATGCCAAGGAGAACAGCATTCAAGGGTACTGCTCCCATCAACTTGTCAGATAGGCTTAACCAGGTGCTTCGTTGGGCACTTGGATCCATTGAGATCTTCTTCAGTCGCCATTGCCCGTTATGGTATGGCTACAAGGAAGGGAAGCTAAAGTGGCTTGAGAGGTTTGCATATGCAAACACAACTGTCTACCCCTTCACATCCATACCTCTTGTTGCATACTGTATTCTTCCTGCTGTCTGCTTACTCACTGACAAATTCATCATGCCGCCGATAAGTACCTTTGCTGGTTTGTACTTTGTTGCTCTCTTCTCTTCAATCATTGCAACTGGCATCCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAAGAATGGTGGAGAAACGAACAATTCTGGGTCATTGGTGGTGTATCAGCACATCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTGTTGGCTGGAATTGACACAAACTTCACGGTCACATCCAAGGCAGCAGATGATGAAGAATTCGGAGAGTTATACACCTTCAAGTGGACTACTCTCTTGATTCCTCCAACTACAATCTTAATAATCAACATTGTTGGGGTTGTTGCTGGAATCTCAGATGCAATAAACAATGGTTACCAATCATGGGGACCTCTCTTTGGAAAACTCTTTTTCTCCTTCTGGGTGATTGTCCATCTATATCCATTCCTTAAAGGTTTGATGGGTCGGCAAAACCGCACACCTACCATAGTTGTGATATGGTCAGTGCTACTGGCTTNNNNNNNNNNTTTGCTCTGGGTAAGAATTGATCCATTCGTGACAAAAACTAAAGGACCTGATACCAAGCTGTGTGGAATAAACTGCTAA 3117 0.4456 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDEVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDEDEEDVDDIEHEFNIEDERNRHDHSAESMLYGKMSYGRGPEDEENAQFPPVISGGRSLPVSGELSAVGSHAYGEMLSSTLHKRVHPYPVSEPGSERWDDKKDGWKERMDDWKLQQGNLGPEPDEDFDAALLDVTRQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRILNPVHDAFGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCTFESLSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPPGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGKRKKAKHAKNDAIAEAANLKAMEDDKELLMSQMNFEKKFGQSSIFVTSTLMEDGGVPPSSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPRRTAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGYKEGKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLAXXXXLLWVRIDPFVTKTKGPDTKLCGINC 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271985g00017 1038 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Stsc271985g00017 1038 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Stsc271985g00017 1038 CDD mRING-HC-C4C4_CesA 35 85 - -
Stsc271985g00017 1038 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Stsc271985g00017 1038 Pfam Cellulose synthase 330 1032 IPR005150 GO:0016020|GO:0016760|GO:0030244
Stsc271985g00017 1038 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 233 1002 - -
Stsc271985g00017 1038 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 476 621 IPR029044 -
Stsc271985g00017 1038 FunFam Cellulose synthase 447 621 - -
Stsc271985g00017 1038 SUPERFAMILY Nucleotide-diphospho-sugar transferases 343 805 IPR029044 -
Stsc271985g00017 1038 FunFam Cellulose synthase 19 110 - -
Stsc271985g00017 1038 Coils Coil 643 663 - -
Stsc271985g00017 1038 SUPERFAMILY RING/U-box 21 107 - -
Stsc271985g00017 1038 MobiDBLite consensus disorder prediction 131 152 - -
Stsc271985g00017 1038 Coils Coil 428 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271985g00017 Stsc-Chr271985 56648 61345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271985g00017 1 1038 Cell Wall Biosynthesis AT5G17420 85.659 0.0 1835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271985g00017 K10999 - gmx:100815436 1980.3