Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271985g00014 ATGCAGCAAGGTGATCAGACGGTGATTAGCTTGAGGCCTGGTGGTGGTCGAGGCGGCGGCTCCGGCGGCGGTAGCAGGTTCCTTGCTCCTCGATTCGACTCCTCCTCTTCTTCTTCCTCCACAACTTCTGCTTCCCCTGCTTTCGGCGATCCTCCTCTCCTCCGCCCCCATGGCGGCGCTCCTTCTGCGTTCTCCATCAAGGCTGGAGATTCACGGTTTGAGGGTCGCGAACGGGTGCGATATACCAAGGATCAGCTTTTAGAGCTTAGAGAGGCTGTTCAAATCCCTGATCATATTTTGAAGATCAAACAAGATATTGAATCTGAACTGTTTGGTGAAGATCAAAATCAAAGCTGGGGCCGCTCTGAGAGCAATCCTCAACCTCAATTTCAAAATCGATACTCTGAACCTGATAATCGTGACTGGCGTGGCCGGTCTGGGCAGCCTCCTCCTGCGAATACAGATGAGAGGTCCTGGGATAATCTCAGGGACCGGGAAAATAGGGAGTTTGGCAATACTAGTCAGGTTAATCGTCAAGACCAACTGAATTCACAGTTTGCAAGGGCACAAATCTCATCTAACCAAGGGGGAGGACCTGCTCCTACTCTAGTCAAGGCTGAGGTGCCATGGTCAGCTAGAAGGGGAAGTCTTTCTGAAAAGGATCGTGTCCTGAAGACCGTTAAAGGAATACTAAATAAGTTGACTCCTGAGAAATTTGATCTTCTAAAGGGTCAGTTGATTGATTCAGGCATAACATCAGCTGACATACTCAAGGGAGTCATTTCGCTTATATTTGATAAGGCAGTGCTAGAACCAACTTTTTGCCCCATGTATGCTCAGCTCTGTTCTGATCTTAACGAAAAGCTGCCTCCATTCCCATCAGATGAACCTGGTGGGAAAGAAATCACTTTTAAGCGAGTTCTCTTGAATATCTGCCAGGAGGCATTTGAAGGTGCTGATAAGCTGAGGGAAGAACTTAGGCAAATGACTGCCCCTGATCAAGAAATGGAGCGCCGTGACAAGGAGAGACTTGTCAAGCTTCGTACTCTTGGAAACATCCGTTTAATTGGAGAGCTGCTGAAGCAAAAAATGGTTCCAGAAAAGATTGTCCACCACATTGTTCAGGAGCTTTTAGGACCTCCTGACAGCAAGATCTGTCCAGCTGAGGAAAATGTTGAAGCTATATGTCAATTTTTTAACACCATTGGTAAGCAGCTCGATGAAGGTCTAAAATCAAGACGGATAAATGATATTTACTTCAACCGGTTGAGAGAGTTGAGCACAAACTCCCAACTTGCACCACGTCTGAGGTTCATGGTTCGTGACGTTCTAGATTTGCGTTCTAATGACTGGGTTCCAAGACGTGAAGAGGTGAAAGCTAAAACCATCACTGAAATTCATTCGGAGGCCGAAAAGAATCTTGGTCTTCGTCCAGGTGCCACTGCGAGTATCAGAAATCCTCGTGGTGTAGTTTCTGGGGTTCCTGGAAATACCAACCCGGGGGGATTCCCCATTGCTCGACCTGGCACTGGGGGCTTGATGCCTGGGATGCCCGGGACAAGGAAGATGCCTGGGATGCCTGGAATGGATAATGACAATTGGGAGATGCCTAGGACTAGATCAATGCCAAGAGGTGACATTTCAGGTGCTCAAACTGCAGGACGCNNNNNNNNNNAGTCTCCTATGTTTTCCAAGTCATCAACCCTGAGCTCTAAGTATCTACCTCAAGGCAGTGCTGGTCTAATTGGGAGGAACAGTGCCTTAGTGCATGGAGGAGGTGGCCCTGCTGCTCCTCGTCCATCAAACTATGGCTTTGGTGCCGAGCCCGCACCTCAGGTTGCTTCACCTGTGAAAGCCGCTCCTCCTGCTGTGTCCTCTGAGAGGCCACAGGCTCAGGCTCAGGCTCCAGTTGTAAAATCGGATACTGCTGATCTTCACCGTAAAACTGTATCTCTTCTGGAAGAATATTTCAGTGTTCGCCTCATGGATGAGGCACTGCTGTGCGTGGAGGAACTAAAGTCTCCTGGTTACCACCCAGAGGTTGTAAAGGAGACCATTTCTCTTGCTCTGGATAAAAGTCCACCCTGCGTTGAACCAGCTGCCAATCTTATTGAGCATCTTTTGATGAAGAAGATTCTTGTACCCAGAGACATAGGTACTGGTTGCATGTTATTTGCTTCTATGATTGACGATATCGGCATAGACTTACCTAAAGCACCAAACAATTTTGGGGAGATAATAGGGAGACTGATTTTGGCTGGAGGTTTGGACTTCAAGGTGGTGAGGGATATCCTTAAGAAGGTGGAGGATGACCGGTTCCAGAAAGTAATATTCGACAGCGCTATGCATGTGATCAGCTCCGCGTCCGGGCAAGCAGTGTTGGAATCACAAGCCTCGGATATCGAGGCGTGCCGGGGGCTGTTCCAGTGA 2430 0.4835 MQQGDQTVISLRPGGGRGGGSGGGSRFLAPRFDSSSSSSSTTSASPAFGDPPLLRPHGGAPSAFSIKAGDSRFEGRERVRYTKDQLLELREAVQIPDHILKIKQDIESELFGEDQNQSWGRSESNPQPQFQNRYSEPDNRDWRGRSGQPPPANTDERSWDNLRDRENREFGNTSQVNRQDQLNSQFARAQISSNQGGGPAPTLVKAEVPWSARRGSLSEKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNICQEAFEGADKLREELRQMTAPDQEMERRDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPPDSKICPAEENVEAICQFFNTIGKQLDEGLKSRRINDIYFNRLRELSTNSQLAPRLRFMVRDVLDLRSNDWVPRREEVKAKTITEIHSEAEKNLGLRPGATASIRNPRGVVSGVPGNTNPGGFPIARPGTGGLMPGMPGTRKMPGMPGMDNDNWEMPRTRSMPRGDISGAQTAGRXXXXSPMFSKSSTLSSKYLPQGSAGLIGRNSALVHGGGGPAAPRPSNYGFGAEPAPQVASPVKAAPPAVSSERPQAQAQAPVVKSDTADLHRKTVSLLEEYFSVRLMDEALLCVEELKSPGYHPEVVKETISLALDKSPPCVEPAANLIEHLLMKKILVPRDIGTGCMLFASMIDDIGIDLPKAPNNFGEIIGRLILAGGLDFKVVRDILKKVEDDRFQKVIFDSAMHVISSASGQAVLESQASDIEACRGLFQ 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271985g00014 809 MobiDBLite consensus disorder prediction 1 69 - -
Stsc271985g00014 809 Gene3D - 639 803 - -
Stsc271985g00014 809 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 48 794 IPR045208 GO:0003743
Stsc271985g00014 809 Gene3D - 215 451 - -
Stsc271985g00014 809 MobiDBLite consensus disorder prediction 30 47 - -
Stsc271985g00014 809 MobiDBLite consensus disorder prediction 157 171 - -
Stsc271985g00014 809 SMART ma3_7 645 757 IPR003891 -
Stsc271985g00014 809 MobiDBLite consensus disorder prediction 113 203 - -
Stsc271985g00014 809 SUPERFAMILY ARM repeat 641 788 IPR016024 -
Stsc271985g00014 809 MobiDBLite consensus disorder prediction 479 570 - -
Stsc271985g00014 809 MobiDBLite consensus disorder prediction 113 135 - -
Stsc271985g00014 809 Pfam MIF4G domain 224 450 IPR003890 GO:0003723|GO:0005515
Stsc271985g00014 809 FunFam Eukaryotic translation initiation factor isoform 4G-2 215 451 - -
Stsc271985g00014 809 ProSiteProfiles MI domain profile. 644 766 IPR003891 -
Stsc271985g00014 809 MobiDBLite consensus disorder prediction 583 610 - -
Stsc271985g00014 809 Pfam MA3 domain 646 757 IPR003891 -
Stsc271985g00014 809 MobiDBLite consensus disorder prediction 172 199 - -
Stsc271985g00014 809 SMART if4_15 224 450 IPR003890 GO:0003723|GO:0005515
Stsc271985g00014 809 SUPERFAMILY ARM repeat 218 453 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271985g00014 Stsc-Chr271985 40741 45891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271985g00014 1 807 Eukaryotic Initiation Factors Gene Family AT5G57870 64.373 0.0 988
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271985g00014 K03260 - gmx:100781275 1244.57