Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271985g00007 ATGGAGTTCAACAACCGAACTATTCCTCCTCTTTCTCCTCCTCCTGCCATCGGCGGTTACTCCGATCGACCGTTGCTAGGTGAGTTTATAAACACGGTTTCGATGCCACTGAACAATGCGGTTGCCGGAGACGCCATGCGGGAACTGGAGAAGGCGCAGATACGGCGAGAGATGATTGCCAGCGGCGTTGCACGGAGGATTCAGCTTGAAGCTGAGGTTAGGAGGGAGCTTGCCTTGGAAGCATTGCTGGGAATTCTTCCAATGCAGAGGAATCTAAGTGATGAGAGAGTGGCAATGAGTTTGAATCAACCTTTCAATGGTAGATTTGCCCCTCCAAAATCACAACAATTGCCACAACTCATGGCTCCTTTGAAGATAGAGCCTTGTCCTGAAGAGACTAGCAAGAAGGATAAAGTGATCATATTGGACAAGCCAAATCCAGATTCCAGAAAGCGGAAAGCTGTAATACCCTCCCTTGATGAGCATCGTAAACCCAAGGAAGAGTTCAGTTGTGCGCTGTGCCAGGTTAGTGCTCCAAATCAGGGAATCTTTAATGCACATCTTCAGGGTAAGAAGCATAAGGCGAAGGAAGCATCCCTGAGAAAACAGAACAATGCTAAACGTGTCAAGGTAGAATCTAAGAATGAGGAGCAGCCTGGGAAGAATGAGCAAAACATAGAACCGTTGAAGAATGAGAATGGTACAACAACAACCATTGGTGATGAAGCGGAGAGAAGAATTGCATTAAAGAAGATACGAGCCAAATTTTGGTGCGAAACGTGTCAGGTTGGAGCTTGGGCAGAAGCCGTGATGGAAGACCACTTGAAAGGGAAAAGGCACTACCTGAACCAACTGAAGAAACTTGACGAAAACAATTGA 879 0.4676 MEFNNRTIPPLSPPPAIGGYSDRPLLGEFINTVSMPLNNAVAGDAMRELEKAQIRREMIASGVARRIQLEAEVRRELALEALLGILPMQRNLSDERVAMSLNQPFNGRFAPPKSQQLPQLMAPLKIEPCPEETSKKDKVIILDKPNPDSRKRKAVIPSLDEHRKPKEEFSCALCQVSAPNQGIFNAHLQGKKHKAKEASLRKQNNAKRVKVESKNEEQPGKNEQNIEPLKNENGTTTTIGDEAERRIALKKIRAKFWCETCQVGAWAEAVMEDHLKGKRHYLNQLKKLDENN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271985g00007 292 PANTHER OS06G0651300 PROTEIN-RELATED 44 289 - -
Stsc271985g00007 292 MobiDBLite consensus disorder prediction 195 238 - -
Stsc271985g00007 292 MobiDBLite consensus disorder prediction 199 223 - -
Stsc271985g00007 292 Gene3D Classic Zinc Finger 160 206 - -
Stsc271985g00007 292 MobiDBLite consensus disorder prediction 224 238 - -
Stsc271985g00007 292 Pfam Zinc-finger of C2H2 type 169 193 - -
Stsc271985g00007 292 Pfam Zinc-finger of C2H2 type 256 280 - -
Stsc271985g00007 292 Gene3D Classic Zinc Finger 241 287 - -
Stsc271985g00007 292 SMART ZnF_U1_5 166 200 IPR003604 GO:0003676|GO:0008270
Stsc271985g00007 292 SMART ZnF_U1_5 253 287 IPR003604 GO:0003676|GO:0008270
Stsc271985g00007 292 SUPERFAMILY beta-beta-alpha zinc fingers 248 283 IPR036236 -
Stsc271985g00007 292 SUPERFAMILY beta-beta-alpha zinc fingers 155 202 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271985g00007 Stsc-Chr271985 20718 22837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271985g00007 168 283 C2H2 Transcription Factor Family AT5G61190 30.282 7.50e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271985g00007 - - adu:107459277 402.905