Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271985g00004 ATGAAGTCGGGTCTCATTTCTCTCAGTTCCCATTTTTCAGCCCAAGCCCTTTGCCAAGCTTCTTCAAGAACTCACCTGCACCAACTTCAAATTCAAACCCAAAGTGTAAGCTCAACACCATTGAGGATCTTCAAGAGGCCATTCCCTCCTCCTTCTCCTGCAAAGCACATAAGGGCTTTGCTTGCAAGGAAGCATGGCTCTGTTAAGCCCAATGAGGCATCAGTTCCTGAAGGGAGTGAGTGTGAGGTTGGATTGGACAAGAGCTTTGGATCCTCTAAGCAGTTTTTGGTTCACTATGAGCTTGGGGAAGAAGTGGGACATGGCCATTTTGGCTACACTTGCTCTGTCAAGGGTAAAAAAGGAACCTTCAAGGGCCATGAGGTTGCTGTCAAAGTCATTCCAAAAGCAAAGATGACAACTGCAATTGCTATTGAAGATGTGAGGAGAGAAGTAAAGATATTGCGAGCTTTAACCGGGCATAAAAACCTGGTACAATTCTATGAAGCCTATGAAGATGATGACAATGCATCAGTCCTTATACAAGCTGAGATGGTTGTTAGTTGA 564 0.4468 MKSGLISLSSHFSAQALCQASSRTHLHQLQIQTQSVSSTPLRIFKRPFPPPSPAKHIRALLARKHGSVKPNEASVPEGSECEVGLDKSFGSSKQFLVHYELGEEVGHGHFGYTCSVKGKKGTFKGHEVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDDDNASVLIQAEMVVS 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271985g00004 187 FunFam CDPK-related kinase 1 92 185 - -
Stsc271985g00004 187 Pfam Protein kinase domain 99 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271985g00004 187 PANTHER SERINE/THREONINE-PROTEIN KINASE 85 181 - -
Stsc271985g00004 187 Gene3D Phosphorylase Kinase; domain 1 88 185 - -
Stsc271985g00004 187 ProSiteProfiles Protein kinase domain profile. 99 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271985g00004 187 SUPERFAMILY Protein kinase-like (PK-like) 95 175 IPR011009 -
Stsc271985g00004 187 ProSitePatterns Protein kinases ATP-binding region signature. 105 131 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271985g00004 Stsc-Chr271985 10163 11209 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271985g00004 33 181 EF-hand Containing Proteins AT3G50530 73.026 2.42e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc271985g00004 Pkinase 2.5e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271985g00004 K13412 - qsa:O6P43_010056 268.47