Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271985g00001 ATGGCTGCTGCAACGAGAGATCATCACCATCATCAGCAGCAGCAGCAAGAACAAGATAGAATAAGAGAACTCCCGGGTCAGCCACGTGTTGGATTCTCACAGTTCTCAGGATATGTAACTGTAAACAAGCAACATGGTAGAGCACTCTTCTACTGGCTCACGGAGTCTCCTTCCTCTTCTTTCAACAACAAGCCTCTTCTTCTCTGGCTCAATGGAGGGCCTGGTTGTTCATCAGTAGCATATGGTGCATCAGAGGAAATTGGCCCATTCAGGATAAACAAAACTGGTTCTTCTTTATATCTTAACAGATATGCTTGGAACACAGAAGCAAATATTTTGTTTCTTGAATCACCTGCTGGTGTTGGTTTCTCATACACAAACACCAGCTCTGATCTCCTAACTTCTGGGGACAAAAGAACAGCTCAGGATGCACTGATTTTTCTTATTAGATGGATGTCAAGATTTCCACAGTATAAATATAGGGACTTTTACATTGCTGGGGAGAGTTATGCAGGTCATTATGTGCCTCAGTTGGCTAAGAAAATCTATGATTATAATAAAGAACATCCCAACATCATTAATCTCAGAGGATTCATTGTGGGAAATGCTGTGACTGATAACTACTATGATAGCATTGGAACTGTGGCATATTGGTGGAGCCATTCTATGATATCAGATCATTCATACAAATCCATCATGAAATATTGTGATTTCACAGCACAGAACACTTCTCAAGAATGTGATGATGCTGTTAACAATGCTGTCAACAATGAATTTGGGAACATTGATCAATACAGTATCTATACCCCTACATGTCCAGCATCACAAAACAGCACTCTTAGGCGCATAAGGCTAAAGAGTTCAATGTTTCATATGATTTCTGGCTATGATCCCTGTACTGAAAATTATGCAGAGAAATATTATAATCTTCCTCAAGTGCAGAAAGCAATGCATGCAAATGTTACCAACATTCCTTATAAATGGACTGCTTGCAGTGATGTGCTCCTGAAAAATTGGAAGGACTCTGAATTTTCTATATTGCCCATATACAAAGAGTTAATTGCTGCTGGATTGAGAATCTGGGTTTTCAGTGGGGACACAGATTCAGTGGTTCCAGTTACAGCCACAAGGTTTTCACTCAACCATCTCAACCTATCCATTACAACTCCTTGGTATCCATGGTACTCATCAGGTGGACAGGTAGGTGGATGGACAGAGGTATATGATGGACTCACATTTGCAACAGTGAGAGGAGCTGGACATGAAGTACCATTGTTTCAGCCAGAGAGAGCTCACATTCTTTTCAAGTCATTTTTGGCAGGGAAGAACCTACCAAATTCTTGA 1344 0.407 MAAATRDHHHHQQQQQEQDRIRELPGQPRVGFSQFSGYVTVNKQHGRALFYWLTESPSSSFNNKPLLLWLNGGPGCSSVAYGASEEIGPFRINKTGSSLYLNRYAWNTEANILFLESPAGVGFSYTNTSSDLLTSGDKRTAQDALIFLIRWMSRFPQYKYRDFYIAGESYAGHYVPQLAKKIYDYNKEHPNIINLRGFIVGNAVTDNYYDSIGTVAYWWSHSMISDHSYKSIMKYCDFTAQNTSQECDDAVNNAVNNEFGNIDQYSIYTPTCPASQNSTLRRIRLKSSMFHMISGYDPCTENYAEKYYNLPQVQKAMHANVTNIPYKWTACSDVLLKNWKDSEFSILPIYKELIAAGLRIWVFSGDTDSVVPVTATRFSLNHLNLSITTPWYPWYSSGGQVGGWTEVYDGLTFATVRGAGHEVPLFQPERAHILFKSFLAGKNLPNS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271985g00001 447 FunFam Carboxypeptidase 346 441 - -
Stsc271985g00001 447 Gene3D - 299 336 - -
Stsc271985g00001 447 MobiDBLite consensus disorder prediction 1 22 - -
Stsc271985g00001 447 PRINTS Carboxypeptidase C serine protease (S10) family signature 151 176 IPR001563 GO:0004185|GO:0006508
Stsc271985g00001 447 PRINTS Carboxypeptidase C serine protease (S10) family signature 102 114 IPR001563 GO:0004185|GO:0006508
Stsc271985g00001 447 PRINTS Carboxypeptidase C serine protease (S10) family signature 115 125 IPR001563 GO:0004185|GO:0006508
Stsc271985g00001 447 PRINTS Carboxypeptidase C serine protease (S10) family signature 411 424 IPR001563 GO:0004185|GO:0006508
Stsc271985g00001 447 SUPERFAMILY alpha/beta-Hydrolases 16 444 IPR029058 -
Stsc271985g00001 447 FunFam Carboxypeptidase 295 444 - -
Stsc271985g00001 447 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 21 428 IPR001563 GO:0004185|GO:0006508
Stsc271985g00001 447 Pfam Serine carboxypeptidase 26 440 IPR001563 GO:0004185|GO:0006508
Stsc271985g00001 447 Gene3D - 346 441 - -
Stsc271985g00001 447 ProSitePatterns Serine carboxypeptidases, serine active site. 165 172 IPR018202 GO:0004185
Stsc271985g00001 447 ProSitePatterns Serine carboxypeptidases, histidine active site. 411 428 IPR033124 GO:0004185
Stsc271985g00001 447 Gene3D alpha/beta hydrolase 15 274 IPR029058 -
Stsc271985g00001 447 FunFam Carboxypeptidase 15 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271985g00001 Stsc-Chr271985 1783 4353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271985g00001 290 444 Calmodulin-binding Proteins AT2G22960 28.846 1.62e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271985g00001 K16297 - gmx:100783242 775.778