Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271984g00005 ATGGCAGAGCGTGTGCTCTTCACTCGTCCTTCATTCACTTTACCATCTCAAGCTCAACCGTCTCCAACAACCACAATGGCTTCCACCGCCACTGCCGCTATCGCCGCCGCACGCATTATTCCCTCCGCCACTGCACTCTCCTCTTCATCTTCCCGCTCCTTCTTCTCCTCCTCTTCCGCTTCTCGTTCCTCGCTCAAATGCCTCCACCTTCGCTCCTCTCCTCGCATTTCTCACCTCTTCGTCAATCAGCGAAGAGCTGAGGTTCGTGTTTCGAGTGGAGGATATGCAAGGGTTTCTGCTCCGAAGTCGTTTGCATCTGATCCTGATCAGCTGAAGAGTGCTAGAGAAGATATCAAGGAGCTTCTCAGGACAAAATTCTGCCATCCGATTCTGATTCGCATGGGATGGCATGATGCTGGTACCTACAATAAGAATATTGAGGAATGGCCACAGAGAGGTGGTGCTAATGGTAGTTTAAGATTTGAAATTGAGCTGAAACATGCAGCCAATGCTGGACTTGTGAACGCATTGAAGCTTCTTCAGCCAATCAAAGACAAATATGCCGGTGTGACATATGCAGACTTATTTCAGTTGGCTGGTGCTACTGCTGTTGAGGAAGCTGGAGGCCCAAAAATCCCTATGAAATATGGAAGAGTGGATGTCTCAGCACCTGAACAATGTCCTGAAGAAGGCAGACTTCCAGATGCTGGTCCTCCCGCTCCGGCTGATCATTTGCGTCAAGTGTTCTATAGAATGGGTTTGAATGACAAGGAAATTGTTGCATTATCTGGTGCGCACACACTGGGAAGGTCCAGACCTGAGCGTAGTGGCTGGGGCAAGCCTGAGACTAAATATACAAAAGATGGACCAGGAGCACCTGGAGGACAATCATGGACAGTACAATGGTTGAAGTTTGATAACTCATACTTCAAGGACATCAAGGAAAAAAGGGATGAAGATTTATTGGTATTGCCAACAGATGCTGCTCTTTTTGAGGATCCATCCTTCAAGGTTTATGCTGAGAAGTATGCCGAAGATCAAGTAGCATTCTTCAATGATTATGCTGAAGCCCATGCCAAACTAAGCAACCTTGGTGCAAAATTTGATCCTCCAGAGGGCATAGTATTAGATACATCTCCAAAGCCACAAGCAGAGAAGTTTGAAGCAGCCAAGTACTCGTCTGGAAAGGATTAA 1194 0.4715 MAERVLFTRPSFTLPSQAQPSPTTTMASTATAAIAAARIIPSATALSSSSSRSFFSSSSASRSSLKCLHLRSSPRISHLFVNQRRAEVRVSSGGYARVSAPKSFASDPDQLKSAREDIKELLRTKFCHPILIRMGWHDAGTYNKNIEEWPQRGGANGSLRFEIELKHAANAGLVNALKLLQPIKDKYAGVTYADLFQLAGATAVEEAGGPKIPMKYGRVDVSAPEQCPEEGRLPDAGPPAPADHLRQVFYRMGLNDKEIVALSGAHTLGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKEKRDEDLLVLPTDAALFEDPSFKVYAEKYAEDQVAFFNDYAEAHAKLSNLGAKFDPPEGIVLDTSPKPQAEKFEAAKYSSGKD 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271984g00005 397 Pfam Peroxidase 115 346 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc271984g00005 397 SUPERFAMILY Heme-dependent peroxidases 108 367 IPR010255 GO:0004601|GO:0006979|GO:0020037
Stsc271984g00005 397 FunFam L-ascorbate peroxidase T, chloroplastic 236 359 - -
Stsc271984g00005 397 ProSitePatterns Peroxidases proximal heme-ligand signature. 258 268 IPR019793 -
Stsc271984g00005 397 ProSiteProfiles Plant heme peroxidase family profile. 190 375 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc271984g00005 397 PRINTS Plant ascorbate peroxidase signature 327 351 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc271984g00005 397 PRINTS Plant ascorbate peroxidase signature 107 127 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc271984g00005 397 PRINTS Plant ascorbate peroxidase signature 128 143 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc271984g00005 397 PRINTS Plant ascorbate peroxidase signature 189 207 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc271984g00005 397 PRINTS Plant ascorbate peroxidase signature 208 220 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc271984g00005 397 MobiDBLite consensus disorder prediction 10 26 - -
Stsc271984g00005 397 MobiDBLite consensus disorder prediction 266 293 - -
Stsc271984g00005 397 FunFam L-ascorbate peroxidase S chloroplastic/mitochondrial 114 238 - -
Stsc271984g00005 397 MobiDBLite consensus disorder prediction 1 26 - -
Stsc271984g00005 397 CDD ascorbate_peroxidase 99 369 - -
Stsc271984g00005 397 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 96 368 IPR044831 GO:0004601|GO:0034599
Stsc271984g00005 397 Gene3D Peroxidase, domain 2 236 359 - -
Stsc271984g00005 397 Gene3D - 114 367 - -
Stsc271984g00005 397 PRINTS Haem peroxidase superfamily signature 208 220 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc271984g00005 397 PRINTS Haem peroxidase superfamily signature 128 142 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc271984g00005 397 PRINTS Haem peroxidase superfamily signature 190 207 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc271984g00005 397 PRINTS Haem peroxidase superfamily signature 298 313 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc271984g00005 397 PRINTS Haem peroxidase superfamily signature 258 273 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271984g00005 Stsc-Chr271984 52449 57626 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271984g00005 190 367 Peroxidase AT4G17690 33.498 4.94e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271984g00005 K00434 - gmx:100802238 651.358