Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271982g00012 ATGAGTTGTTTCTCTCTTCTTTGTGGAAGAAAGGGGTCTTCCTTGTCTGCACAACCAACCGAAGCTGATATAGATCTTTCTAGCTTTAAGAACATCAATCTCTACACTTACAAGGAATTGCAAATTGCCACTGAACGTTTTAGTCCTGCAAATAAGATAGGGGAGGGAGGTTTCGGATCGGTATATAAGGGAAAGTTGAGAAATGGTACTATGGCTGCTATTAAGGTTTTGTCAGCAGAATCCAAACAAGGAGTCAAGGAGTTCTTGACGGAAATCGAAGTGATCTCTAGTATAGAGCATGAGAATCTAGTTAAGTTGTATGGTTGCTGTGTTGAGAGGAACCAGAGGATTTTGGTATATGGCTATCTTGAGAATAACAGCCTAGCACAAACACTTGTTGGTGGAGGCCGTAGTAGCTTGCACTTCAGCTGGCATACACGGAGGAGCATTTGCATAGGTGTTGCGTGGGGTCTTGCATTTCTTCATCATGAAATTGAGCCACATATTATCCATAGAGACATTAAAGCTAGCAACATATTACTTGACAAAGATTTGAAGCCCAAAATTTCAGATTTCGGCCTAGCAAGGCTTATTCCATCAAACATTACCCATATTAGCACACTTGTTGCCGGCACGGCTGGCTATCTCGCACCTGAATATGCGATACGAAGTCAAGTGACAAGAAAATCAGATGTTTACAGTTTTGGGGTTCTGCTACTAGAAATTGTTAGTGGAAGGTGCAACACAAATAGACGTTTACCTGCAGAAGAAAGGTATCTACACACAAGGGCTTGGGATTTGTATGAGAAGGGGGAGCTGGAGAGCTTGGTTGATTCCTCACTAGGCGGAGACTTCGACGTTGAGGAGGCGATAAGGTTTTGCAAGATCGGTCTAATTTGCATTCAGGATTCACTTCAGCTCCGGCCTTCAATGTCTACCGTGCACGACATGCTGATAGGCGAAAGAGATGTGAATGAAAAGATGATGTCAAAACCAGGCTTACTATTTGACTTTACGGAACCCAAAGATCAAGGAAAACAGAAAGGCAAGGTTGAAGAAGTTGAAGTGGAAAAAACATCTTTGTTGGCCATGACTGGTTCAGAGAAGAAACATGATTTGGAAAGTTCATCTTTATCAGCAAGCACAGGTTCTTATGCTACCATGACCTTCACTTCAATTTGTGATAGAAGCAATTAA 1197 0.4211 MSCFSLLCGRKGSSLSAQPTEADIDLSSFKNINLYTYKELQIATERFSPANKIGEGGFGSVYKGKLRNGTMAAIKVLSAESKQGVKEFLTEIEVISSIEHENLVKLYGCCVERNQRILVYGYLENNSLAQTLVGGGRSSLHFSWHTRRSICIGVAWGLAFLHHEIEPHIIHRDIKASNILLDKDLKPKISDFGLARLIPSNITHISTLVAGTAGYLAPEYAIRSQVTRKSDVYSFGVLLLEIVSGRCNTNRRLPAEERYLHTRAWDLYEKGELESLVDSSLGGDFDVEEAIRFCKIGLICIQDSLQLRPSMSTVHDMLIGERDVNEKMMSKPGLLFDFTEPKDQGKQKGKVEEVEVEKTSLLAMTGSEKKHDLESSSLSASTGSYATMTFTSICDRSN 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271982g00012 398 Gene3D Transferase(Phosphotransferase) domain 1 123 331 - -
Stsc271982g00012 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Stsc271982g00012 398 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271982g00012 398 Gene3D Phosphorylase Kinase; domain 1 18 122 - -
Stsc271982g00012 398 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Stsc271982g00012 398 SUPERFAMILY Protein kinase-like (PK-like) 26 318 IPR011009 -
Stsc271982g00012 398 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 346 - -
Stsc271982g00012 398 FunFam cold-responsive protein kinase 1 18 122 - -
Stsc271982g00012 398 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 330 - -
Stsc271982g00012 398 CDD STKc_IRAK 53 318 - -
Stsc271982g00012 398 ProSiteProfiles Protein kinase domain profile. 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271982g00012 398 Pfam Protein kinase domain 50 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271982g00012 Stsc-Chr271982 85946 88334 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271982g00012 35 391 Receptor kinase-like Gene Family AT1G53430 48.883 8.61e-104 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc271982g00012 Pkinase 6.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271982g00012 - - gmx:100797257 541.576