Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271982g00011 ATGGGAACACCCTTCAAGCCAATACCATGCACAAGAAGAACCACATGCTATAGACTAGAAACCAAGAACTTATCTTACAAATTATGCAGCCAATTTGATGATCTTAGAAGCTTTTGTTTCGGGTCGCGAAGGAGGAGGAGCAGCGGAGGGAAATACATTTTGAAGGATGTTACTTGTGAGGCAAGGCCAGGGGAGCTGACAGCCATTGCTGGCCATAGTGGAGCTGGAAAAACCACCCTGCTTGAAATCCTTGCAGGGAGAATATCTCCCTGCAAAGTTTCCGGCCAATTGCTCATGAATCATCGGCCAGTGGATTTGAACCGGTTCAGAAGAATGTCAGGCTATGTCACACAGGAAGATGCTTTGTTTCCATGTCTTACAGTGAGAGAGACACTCATGTATAGTGCTTTGCTGAGGCTTCCCGGGGGCCAAAAACTGGCTGCTAAAAGAGTTGAGGACTTGATCAATGAACTTGGGTTGGATCATGTTGCAGATTCAAGAATTGGTGATGGATCAAGCCATGGAATTTCGGGTGGCGAAAGGAGGAGAGTCTCCATTGGTGCTGATTTGGTTCATGACCCTGTAGTTGTCTTGATTGATGAACCAACTTCAGGGTTGGATTCTGCATCAGCTCTTAGTGTGATCTCATTGCTTAGACTAATGGCATTCAATCAGGGAAAGACAATTGTTCTGACTATCCACCAACCCGGTTTTCGCATCTTGCAGCTATTCGATGGCCTCATCTTGCTAGCGGATGGATTCGTCGTGCATAATGGTTCATTGGATCTTCTTGAGGCTAGGCTCAGGTTATCCGGCCATCAAATTCCGGCCCGCGTCAATGTCCTTGAATATGCACTTGATGTCATGGAAAGCTTGGTTATACACACATCATCAGAATCTGAGGAGAACCAATATCTTCTTAGAGACAAAGAGTACGAAGATCACAGGATGAGAATGCAGTACTCCAAGATTGTTAAAGAAAAGGCTCTCTTATACTCGAATACTCCTATGGAAGAGATTCTGATCTTAGGAAGAAGGTTTTGCAGCAACATATTCAGAACTAAGCAACTCTTTCTCACCAGAGTTATACAAGCCTTGGTAGCTGGATTCATTCTTGGAACTATATTCTTGAATACAGGTAGCAAGCAAGGTCAATTAGCATTGCAGACGCGAAGTGGCTTCTTTGCTTTCAGCCTTACCTTTCTGTTATCTTCGACCACAGAAGGCTTGCCAATTTTCTTGGAAGAGAGAAGAACTTTGATGAGAGAGACCTCAAGAGGAGCTTATAGAGTCTCTTCCTATGTTCTTGCAAATACCCTTGTTTTTCTTCCTTTCCTTTTGATGGTTTGTGTTCTATATACCACCCCGGTTTATTGGCTTGTTGGATTAAGGAAAGACATTGATGGATTCCTCTACTTCTCTTTAGTTGTTTGGTTGGTCCTCCTCATGTCGAACTCTCTTGTGGCGTGTTTCAGCGCTCTCGTGCCGAATTTCATCCTTGGAAACTCGGTGATCGCAGGCCTAATGGGATCTTTCTTCCTGTTTTCGGGTTATTTCATATCAAAGGAGAAGATGCCTAGTTACTGGATTTTTATGCACTATTTGAGTTTATTCAAGTACCCTTTTGAGTGTCTTATGATAAATGAGTATGGAGGAGATCAAGGGAGAATAAGATGCCTAGAAACTAGGAATGGAGAATGCATATTGCATGGTGTTGAGTTCTTGGGACAACAGGGTTTGAAAGAGTCAAAAAAGTGGACCAATTTGGTTGTAATGTTGGGGTTCATAATAGGGTATAGAGTTCTTTGCTTTTGTATTCTTTGGTTCAGATGTTACAGAACCAGAACATAA 1851 0.43 MGTPFKPIPCTRRTTCYRLETKNLSYKLCSQFDDLRSFCFGSRRRRSSGGKYILKDVTCEARPGELTAIAGHSGAGKTTLLEILAGRISPCKVSGQLLMNHRPVDLNRFRRMSGYVTQEDALFPCLTVRETLMYSALLRLPGGQKLAAKRVEDLINELGLDHVADSRIGDGSSHGISGGERRRVSIGADLVHDPVVVLIDEPTSGLDSASALSVISLLRLMAFNQGKTIVLTIHQPGFRILQLFDGLILLADGFVVHNGSLDLLEARLRLSGHQIPARVNVLEYALDVMESLVIHTSSESEENQYLLRDKEYEDHRMRMQYSKIVKEKALLYSNTPMEEILILGRRFCSNIFRTKQLFLTRVIQALVAGFILGTIFLNTGSKQGQLALQTRSGFFAFSLTFLLSSTTEGLPIFLEERRTLMRETSRGAYRVSSYVLANTLVFLPFLLMVCVLYTTPVYWLVGLRKDIDGFLYFSLVVWLVLLMSNSLVACFSALVPNFILGNSVIAGLMGSFFLFSGYFISKEKMPSYWIFMHYLSLFKYPFECLMINEYGGDQGRIRCLETRNGECILHGVEFLGQQGLKESKKWTNLVVMLGFIIGYRVLCFCILWFRCYRTRT 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271982g00011 616 CDD ABCG_EPDR 51 259 - -
Stsc271982g00011 616 Pfam ABC-2 type transporter 339 550 IPR013525 GO:0016020|GO:0140359
Stsc271982g00011 616 Pfam ABC-2 type transporter 234 307 IPR043926 GO:0140359
Stsc271982g00011 616 Gene3D - 31 281 IPR027417 -
Stsc271982g00011 616 SMART AAA_5 63 254 IPR003593 GO:0016887
Stsc271982g00011 616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 266 IPR027417 -
Stsc271982g00011 616 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 17 601 - -
Stsc271982g00011 616 FunFam ABC transporter G family member 10 36 283 - -
Stsc271982g00011 616 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 30 277 IPR003439 GO:0005524
Stsc271982g00011 616 Pfam ABC transporter 54 204 IPR003439 GO:0005524
Stsc271982g00011 616 ProSitePatterns ABC transporters family signature. 176 190 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271982g00011 Stsc-Chr271982 83817 85720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271982g00011 53 264 Calmodulin-binding Proteins AT2G36910 27.397 4.12e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271982g00011 K05681 - gmx:100776372 975.696