Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271982g00009 ATGAGAATGGTATATCAGGGTCTTGATATTGGATCTGCAAAGCCTTCCCAAAGTGATAGAAAGGAGGTGCCACATCATCTGGTTGACATACTGCATCCATGTGAAGACTATTCTGTTGGACAGTTTTTTGAGGATGCAAGACAAGCTACAAGATCTATTCTTGACAAAGGACGTGTTCCCATAGTTGTCGGGGGCACCGGACTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTGCCTATAGCCTCTCAGGACATTACATCCAAAGTACATCTAGAGTTGGCTGAACTGCAGAGAAAAGAAGAATGGGATGCAGCTGTGCAGTTGGTGGTAAAAGCAGGTGATCCGAAGGCCCAACTCTTAGCAGTGAATGATTGGTATCGCTTACGGCGTAGCTTGGAAATTATTAAGTCCAGTGGGTCACCTCCTTCTGCTTTTCGGGTACCATATAATTCTTTCAGGGATCAGCATGACCTTAATATTACTGATGGTTCTGGGACAAGCACAGCAGAAGAAACCAATACGTCAGATTTGGACTATGAGTTTATGTGTTTTTTCCTTTCTGTCAAAAGACTTGACCTCTATAAATCACTTGATTATCGGTGTGAAGAAATGCTATTAGGAAGGGATGGCATTCTATCTGAGGCTCAATGGCTTCTTAATTTGGGTCTTCTTCCAAATTCAAATTCTGCAACTCGAGGAATTGGTTACAGACAAGCCATGGAGTACTTATTAAGTTGCAGACAGCTAAATGGTCAGAGTTCAGTAGGAGAATTTTACAAGTTCTTATCTGAATTTCAAAAAGTATCACGGAATTTTGCAAAGAGACAGATGACATGGTTTCGAAATGAAAAAATATACAACTGGCTTGATGCTTCTAAACCTCTGGAAACAGTACTCAACTTCATTGTTGATTCATACAAGAACAAGAGTGGAAGTCTTGTTGTGCCCGAGAACCTAAGAATGCCAAGGGATATTACTAATCACCGAGAAGCTAATTTAATTAAGTCTTACAGAACCAGAAACAGGCATTTTGTGAGGCGGGAAGATTGTTCTCATATTCTCGACTGGATAGGGAAGACCCAAAGTGGGATGCAGAGAGTGGTAAATCCAATAGAAGCAAATTACGAGAGAGTCTGA 1143 0.4094 MRMVYQGLDIGSAKPSQSDRKEVPHHLVDILHPCEDYSVGQFFEDARQATRSILDKGRVPIVVGGTGLYLRWFIYGKPDVPIASQDITSKVHLELAELQRKEEWDAAVQLVVKAGDPKAQLLAVNDWYRLRRSLEIIKSSGSPPSAFRVPYNSFRDQHDLNITDGSGTSTAEETNTSDLDYEFMCFFLSVKRLDLYKSLDYRCEEMLLGRDGILSEAQWLLNLGLLPNSNSATRGIGYRQAMEYLLSCRQLNGQSSVGEFYKFLSEFQKVSRNFAKRQMTWFRNEKIYNWLDASKPLETVLNFIVDSYKNKSGSLVVPENLRMPRDITNHREANLIKSYRTRNRHFVRREDCSHILDWIGKTQSGMQRVVNPIEANYERV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271982g00009 380 Gene3D - 79 149 - -
Stsc271982g00009 380 MobiDBLite consensus disorder prediction 1 20 - -
Stsc271982g00009 380 Gene3D - 1 353 IPR027417 -
Stsc271982g00009 380 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 3 290 IPR039657 -
Stsc271982g00009 380 Pfam IPP transferase 4 285 - -
Stsc271982g00009 380 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 100 IPR027417 -
Stsc271982g00009 380 FunFam tRNA dimethylallyltransferase 9 78 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271982g00009 Stsc-Chr271982 60194 66740 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271982g00009 4 287 C2H2 Transcription Factor Family AT2G27760 23.333 2.41e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271982g00009 K00791 - gmx:100808814 566.614