Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271982g00008 ATGAAGATGATTCACAATGGAATCTCCAACCTCCGCACCTGCTTCCGTCTCCCGCTCCCGGACACCTCGCTCTCCCGACCACTGCCGCATTCCCTCCCTTTCCGCCGGAGATGTCTTGCCACAGTGTCCGCCGCCGCTAAGAAGGAGAAAGAGAAGGTCATAGTCATTTCCGGACCCACCGGTACCGGCAAGAGCCACCTGGCTCTCGAGCTCGCCAAGCGCCTCAACGGGGAAATCGTCAGCGCTGACTCTATCCAGGTATATCAGGGTCTTGATATTGGATCTGCAAAGCCTTCCCAAAGTGATAGAAAGGAGGTGCCACATCATCTGGTTGACATACTGCATCCATGTGAAGACTATTCTGTTGGACAGTTTTTTGAGGATGCAAGACAAGCTACAAGATCTATTCTTGACAAAGGACGTGTTCCCATAGTTGTCGGGGGCACCGGACTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTGCCTATAGCCTCTCAGGACATTACATCCAAAGTACATCTAGAGTTGGCTGAACTGCAGAGAAAAGAAGAATGGGATGCAGCTGTGCAGTTGGTGGTAAAAGCAGGTGATCCGAAGGCCCAACTCTTAGCAGTGAATGATTGGTATCGCTTACGGCGTAGCTTGGAAATTATTAAGTCCAGTGGGTCACCTCCTTCTGCTTTTCGGGTACCATATAATTCTTTCAGGGATCAGCATGACCTTAATATTACTGATGGTTCTGGGACAAGCACAGCAGAAGAAACCAATACGTCAGATTTGGACTATGAGTTTATGTGTTTTTTCCTTTCTGTCAAAAGACTTGACCTCTATAAATCACTTGATTATCGGTGTGAAGAAATGCTATTAGGAAGGGATGGCATTCTATCTGAGGCTCAATGGCTTCTTAATTTGGGTCTTCTTCCAAATTCAAATTCTGCAACTCGAGGAATTGGTTACAGACAAGCCATGGAGTACTTATTAAGTTGCAGACAGCTAAATGGTCAGAGTTCAGTAGGAGAATTTTACAAGTTCTTATCTGAATTTCAAAAAGTATCACGGAATTTTGCAAAGAGACAGATGACATGGTTTCGAAATGAAAAAATATACAACTGGCTTGATGCTTCTAAACCTCTGGAAACAGTACTCAACTTCATTGTTGATTCATACAAGAACAAGAGTGGAAGTCTTGTTGTGCCCGAGAACCTAAGAATGCCAAGGGATATTACTAATCACCGAGAAGCTAATTTAATTAAGTCTTACAGAACCAGAAACAGGCATTTTGTGAGGCGGGAAGATTGTTCTCATATTCTCGACTGGATAGGGAAGACCCAAAGTGGGATGCAGAGAGTGGTAAATCCAATAGAAGCAAATTACGAGAGAGTCTGA 1392 0.4447 MKMIHNGISNLRTCFRLPLPDTSLSRPLPHSLPFRRRCLATVSAAAKKEKEKVIVISGPTGTGKSHLALELAKRLNGEIVSADSIQVYQGLDIGSAKPSQSDRKEVPHHLVDILHPCEDYSVGQFFEDARQATRSILDKGRVPIVVGGTGLYLRWFIYGKPDVPIASQDITSKVHLELAELQRKEEWDAAVQLVVKAGDPKAQLLAVNDWYRLRRSLEIIKSSGSPPSAFRVPYNSFRDQHDLNITDGSGTSTAEETNTSDLDYEFMCFFLSVKRLDLYKSLDYRCEEMLLGRDGILSEAQWLLNLGLLPNSNSATRGIGYRQAMEYLLSCRQLNGQSSVGEFYKFLSEFQKVSRNFAKRQMTWFRNEKIYNWLDASKPLETVLNFIVDSYKNKSGSLVVPENLRMPRDITNHREANLIKSYRTRNRHFVRREDCSHILDWIGKTQSGMQRVVNPIEANYERV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271982g00008 463 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 50 373 IPR039657 -
Stsc271982g00008 463 Pfam IPP transferase 86 368 - -
Stsc271982g00008 463 Hamap tRNA dimethylallyltransferase [miaA]. 53 385 IPR018022 GO:0008033
Stsc271982g00008 463 FunFam tRNA dimethylallyltransferase 9 161 232 - -
Stsc271982g00008 463 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 53 230 IPR018022 GO:0008033
Stsc271982g00008 463 Gene3D - 162 232 - -
Stsc271982g00008 463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 183 IPR027417 -
Stsc271982g00008 463 Gene3D - 50 436 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271982g00008 Stsc-Chr271982 60194 66740 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271982g00008 56 370 C2H2 Transcription Factor Family AT2G27760 26.284 4.83e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271982g00008 K00791 - gmx:100808814 653.284