Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271978g00020 ATGGCTCTGCTGCTAGACAACTGCGAGAGCATTCTAATGTCACTAGACTCACACAAATCGGTGCCGGCTCCCTTTCTCACAAAGACATACCAGCTTGTCGACGATCCAGCCACCGATCACATAGTCTCTTGGGGAGAAGACCAAACCACCTTCGTGGTCTGGCGTCCTCCCGAGTTCGCCAGAGATCTCCTCCCCAATTACTTCAAGCACAATAACTTCTCTAGCTTCGTTCGCCAGCTCAACACTTATGGTTTCAGAAAGATTGTTCCTGATAGGTGGGAGTTTGCTAATGAATTCTTCAAGAAGGGAGAGAAGCACTTGCTCTGCGAGATCCATAGAAGGAAAACCGCTCACCACCCTCAGCAACTAACCGCCATCAACCACCACCACTCTCCACTCGGAATCAACGTTCCTTCTTTCTTTCCGTTCTCAGCTAGGCTCAGCATCTCGCCGTCAAACGATTCCGATGACCAAGCCAGCAATTGGTGTGACGACTCTCCGCCGCCAACATCCAGACCGTGCTACAACAGCTCCGTGACGGCGCTGTCGGAGGATAACGAGAGGCTGAGGCGGAGCAACAGCATGCTGATGTCGGAGCTAGCACACATGAAGAAGCTCTACAATGACATAATCTACTTCGTTCAGAATCATGTGAAGCCAGTTCCTCCAAGCAGCAACTCTTGTTCTTCTTCTTTGCTTCTTTGCAATAACAATACAGCGTCATCCCATTCCGGTGGCGTTAATGGTAACGTTTCAATGGTGCAAAGGCCAATGAACCATCTTCTCGGGTATTATTCTACGAACCCTAATAAGCAGCAGGTAACACAAGCGCATGTGCTGAACTCTCCGAGCAACACGGCAAGTAGGAGCTCCGTGACGATTGTTGAAGCGGCGGCGCCACCCTGCAAGACGAAGCTATTTGGAGTGTCGCTGCAGTCGAAGAAACGGGTGCACCCTGAGTATGGGTCGGAGACTAACAAGGCGCGTTTGGTGTTGGAGAAGGATGATCTTGGCTTGAATCTCATGCCTCCTTCTACTTGTTAA 1044 0.5048 MALLLDNCESILMSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGEDQTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAHHPQQLTAINHHHSPLGINVPSFFPFSARLSISPSNDSDDQASNWCDDSPPPTSRPCYNSSVTALSEDNERLRRSNSMLMSELAHMKKLYNDIIYFVQNHVKPVPPSSNSCSSSLLLCNNNTASSHSGGVNGNVSMVQRPMNHLLGYYSTNPNKQQVTQAHVLNSPSNTASRSSVTIVEAAAPPCKTKLFGVSLQSKKRVHPEYGSETNKARLVLEKDDLGLNLMPPSTC 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271978g00020 347 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc271978g00020 347 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc271978g00020 347 Gene3D - 17 116 IPR036388 -
Stsc271978g00020 347 MobiDBLite consensus disorder prediction 151 174 - -
Stsc271978g00020 347 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Stsc271978g00020 347 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 270 IPR027725 -
Stsc271978g00020 347 FunFam Heat stress transcription factor B-4 17 115 - -
Stsc271978g00020 347 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc271978g00020 347 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc271978g00020 347 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc271978g00020 347 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271978g00020 Stsc-Chr271978 92367 94007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271978g00020 1 346 HSF AT1G46264 55.882 1.36e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc271978g00020 HSF_DNA-bind 2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271978g00020 K09419 - gmx:100781389 530.02