Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271978g00019 ATGGACAACACCATTGACCACTTGAAATCAACTTCTTCTTCGGAAGAAGATCAGATGGACTTCATGAATATCATGATGATGCAACTTCCTGATGAATTCTCTTCACCTGATAACACCACCGTCCAGGGATTTCACCCATCACCACAGTTTCTTGGCGCACGCACAAGCAGCACTATGCAACTATCAGATTCAATTGATAATATTAGTAATTCTATGATGCCGTGGTCTTCGTCATTCACACACTTACCATCCACCACAATCTCTTTCTCTAACAACAACCCTAACACAATGCTTCATCATCATCAGCCACAACAAGATCAAACAGAATTACCAAATTTGTTGGGAAATTCAGGCAGTATGATGAGCGAGGGTGCAACGACGGAGGAGAAGCGGAACTCGATGGCGGCGATGAGGGAGATGATATTCAGAATAGCGGCCATGCAGCCAATACACATAGACCCTGAGTCAGTAAAGCCACCAAAGAGGAGGAACGTGAAGATCTCCAAGGATCCGCAGAGCGTGGCGGCGCGTCACAGGAGAGAAAGGATAAGCGAGAGAATAAGGATTCTGCAGAGACTGGTCCCCGGAGGAACCAAGATGGACACTGCTTCAATGCTTGATGAGGCCATTCACTATGTCAAGTTTCTCAAGGCTCAGATTCATTCATTGGAACGAGCTTCTTCTTCTTCTGCAAACAATAATAATAATTTTGCAACAGCAGCATCAATTTCTGCTGGTGCAGGGTTTCCAGTTGCAATGTATAGTAGGACAGCTACTGCCACTGCCACTGGCGCACCTTATCTTTCTCTTCCTAAACCTTATCAAGGCCGAAATGGTCACCATTATAGAGATACATGA 858 0.451 MDNTIDHLKSTSSSEEDQMDFMNIMMMQLPDEFSSPDNTTVQGFHPSPQFLGARTSSTMQLSDSIDNISNSMMPWSSSFTHLPSTTISFSNNNPNTMLHHHQPQQDQTELPNLLGNSGSMMSEGATTEEKRNSMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKAQIHSLERASSSSANNNNNFATAASISAGAGFPVAMYSRTATATATGAPYLSLPKPYQGRNGHHYRDT 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271978g00019 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983
Stsc271978g00019 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 225 IPR036638 GO:0046983
Stsc271978g00019 285 MobiDBLite consensus disorder prediction 266 285 - -
Stsc271978g00019 285 Gene3D - 166 239 IPR036638 GO:0046983
Stsc271978g00019 285 FunFam BHLH transcription factor 170 234 - -
Stsc271978g00019 285 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 13 243 IPR045843 GO:0003700|GO:0006355
Stsc271978g00019 285 Pfam Helix-loop-helix DNA-binding domain 176 216 IPR011598 GO:0046983
Stsc271978g00019 285 SMART finulus 173 222 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271978g00019 Stsc-Chr271978 84459 85316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271978g00019 134 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 93.407 4.50e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc271978g00019 HLH 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271978g00019 - - gmx:100815041 258.07