Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271978g00016 ATGAACTTCAAGAATTTCGGCAACGACGCTGGCCCAGCCGCCGGAGGAAGCGGTGCCGGCGGGAGACCGCCGGGGAATTTCCCGCTGACAAGGCAGCCTTCGGTGTACAATCTGACGTTCGATGAGTTCATGAACACCATGGGAGGTTCAGGAAAGGACTTCGGCTCCATGAACATGGACGAGCTTCTTAAAAACATATGGACAGCTGAAGAGGTTCAAACTATGGCGTCCGCCACAGGTGTCGGTGGTGGAGAACCGGGCTCCGCCGCAGGATTCGCCGGCGCCGGCGTCAACCATTTGCAGAGGCAGGGATCGTTGACGCTCCCGCGAACCCTGAGTCAGAAGACAGTAGATGAGGTCTGGAAAGACATTTCGAAGGAGTACGGCGGGGGATCCACCGGCGGCGGCACGAATCTCCCGCAGACGACTCAGCAGCGGCAGCCGACGTTGAAAGAGATCACGCTGGAGGAGTTCTTGGTGAGAGCAGGTGTTGTTAGAGAAGACGCGCAATTGGCAGCAGCTGGGAAAGCAAACGACAGCGTTTTCGTCGGAGGGAATAGCGGCGGTTTAGGAGTAGGGTTTCAGCAGTTGAACAATGATCCTCTGGTTGGTCTTCAGGCACCAACAAATTTGCCTGTGAATGTTAATGGAGTTAGATCTTCCAATCAGCATCAGCAGCAGATGCAGAATTCACAGTCCCCTCATCAACCGCAGATATTCCCGAAACAAGGTCCTATGAGCTATGCTATGCCTCTGACGAGTGGAATTGTGCAAGGTGGAGGAGGGATGGGGATGGTTGGTTTGTCACCTACTGGGGCTGTTCATGTTGGTACTGGCTCGCCGGCTAGCCAGATTTCGAATGATAAAATGGGAAAGAGCAATGGAGATACTTCTTCGGTTTCTCCGGTGCCTTATGTGTTTAATGGTGGGATGAGGGGGAGGAAGAGCGGTGGAGCAGTTGAGAAGGTGATTGAAAGGAGGCAGAGGAGAATGATCAAGAACAGAGAGTCAGCTGCTAGGTCTCGCGCCAGAAAGCAGGCTTATACCATGGAATTGGAAGCAGAAGTTCAAAAGTTGAAAGAGGAGAACCAAGAACTTCAGAAAAAGCAGGAAGAGATAATGGAAATTCAGAAAAATCAAGTTATGGAAATGATGAATTTGCAACGAGACGGCAAGAGAAGATGCTTAAGACGAACACAAACTGGTCCATGGTAG 1215 0.5177 MNFKNFGNDAGPAAGGSGAGGRPPGNFPLTRQPSVYNLTFDEFMNTMGGSGKDFGSMNMDELLKNIWTAEEVQTMASATGVGGGEPGSAAGFAGAGVNHLQRQGSLTLPRTLSQKTVDEVWKDISKEYGGGSTGGGTNLPQTTQQRQPTLKEITLEEFLVRAGVVREDAQLAAAGKANDSVFVGGNSGGLGVGFQQLNNDPLVGLQAPTNLPVNVNGVRSSNQHQQQMQNSQSPHQPQIFPKQGPMSYAMPLTSGIVQGGGGMGMVGLSPTGAVHVGTGSPASQISNDKMGKSNGDTSSVSPVPYVFNGGMRGRKSGGAVEKVIERRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEENQELQKKQEEIMEIQKNQVMEMMNLQRDGKRRCLRRTQTGPW 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271978g00016 404 Gene3D - 324 380 - -
Stsc271978g00016 404 MobiDBLite consensus disorder prediction 219 243 - -
Stsc271978g00016 404 MobiDBLite consensus disorder prediction 280 300 - -
Stsc271978g00016 404 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 29 404 IPR043452 GO:0003700|GO:0045893
Stsc271978g00016 404 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 329 344 IPR004827 GO:0003700|GO:0006355
Stsc271978g00016 404 SMART brlzneu 322 387 IPR004827 GO:0003700|GO:0006355
Stsc271978g00016 404 Coils Coil 342 379 - -
Stsc271978g00016 404 Pfam bZIP transcription factor 326 377 IPR004827 GO:0003700|GO:0006355
Stsc271978g00016 404 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 324 381 - -
Stsc271978g00016 404 MobiDBLite consensus disorder prediction 1 31 - -
Stsc271978g00016 404 SUPERFAMILY Leucine zipper domain 326 375 IPR046347 GO:0003700|GO:0006355
Stsc271978g00016 404 MobiDBLite consensus disorder prediction 219 240 - -
Stsc271978g00016 404 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 324 375 IPR004827 GO:0003700|GO:0006355
Stsc271978g00016 404 CDD bZIP_plant_BZIP46 326 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271978g00016 Stsc-Chr271978 67465 71938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271978g00016 1 404 bZIP Transcription Factor Family AT3G19290 45.701 1.36e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc271978g00016 bZIP_1 1.8e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271978g00016 K14432 - gmx:100101876 493.041