Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271978g00010 ATGGCTGTGGCAATAGGAAGAAACTTCCCATTTCAGCCATGCACTTCCTTCAAAAGTAAGAGCATAGTCATACATAAACCTTCACCAGGCATAACATACTTGTGGCTCCAACCTGCTGCAGGAGCCAGAGTCAACCATGGGCGCAGTAGGCAAATTTGTGCAGCAGCGCAACAGCGAGCAACATGGCTTCCAGGACTCGATCCCCCACCTTATCTGGACGGAACTTTGGCTGGAGATTTCGGGTTTGACCCTCTTGGACTTGGAGAGGATCCTGAAAGCTTGAGATGGTACGTGCAAGCAGAACTAGTCCACTGTCGCTTTGCCATGCTTGGAGTGCTTGGAATTCTTGTAACAGATTTACTCCGTGTCACAGGACTTAGTAAGATCCCAGTTTGGTTTGAAGCTGGTGCAGTGAAATATGACATTGCCAACACACAGACACTTTTAGTTGTTCAACTACTCTTGATGGGGTTTGTTGAAACAAAAAGGTACATGGATTTTGTTAGCCCTGGATCTCAAGCTAAAGCCTCCTTCTTTGGAATAGAAGATTCATTTGAAGGCTTGGAGCCAGGCTATCCTGGGGGACCTGTGTTAAATCCTCTTGGCCTAGCTAAAGACATAAAAAATGCTCATGACTGGAAGCTTAAAGAGATCAAGAACGGGCGACTTGCAATGGTGGCAATGCTTGGGATCTTTGTGCAAGCTTCGGTGACTCATGTTGGCCCAATTGATAACCTTGTGGAGCATCTCTCCAATCCATGGCATAAGACTATTATTCAGACCCTTGCTAATTCTTAG 798 0.4612 MAVAIGRNFPFQPCTSFKSKSIVIHKPSPGITYLWLQPAAGARVNHGRSRQICAAAQQRATWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHCRFAMLGVLGILVTDLLRVTGLSKIPVWFEAGAVKYDIANTQTLLVVQLLLMGFVETKRYMDFVSPGSQAKASFFGIEDSFEGLEPGYPGGPVLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQTLANS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271978g00010 265 FunFam Chlorophyll a-b binding protein, chloroplastic 60 265 - -
Stsc271978g00010 265 Pfam Chlorophyll A-B binding protein 68 235 IPR022796 -
Stsc271978g00010 265 Gene3D Chlorophyll a/b binding protein domain 69 255 - -
Stsc271978g00010 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 49 264 IPR001344 GO:0009765|GO:0016020
Stsc271978g00010 265 SUPERFAMILY Chlorophyll a-b binding protein 55 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271978g00010 Stsc-Chr271978 38463 39617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271978g00010 49 262 Chloroplast and Mitochondria Gene Families AT3G61470 45.581 2.73e-60 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271978g00010 K08911 - gmx:100804934 407.912