Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271978g00003 ATGTTTGGTCATGGTGGACACCATAGAGTTCCCCTTGCGGTGCTGCTGAAGCGTGAATTGGTCAACGAGAAAATCGAGAAGCCGGAGATTGTGTACGGCCAAGCCAGCCAGAGCAAGAAAGGAGAGGATTTCATTTTGCTCAAGAACGAATGCCAGAGAGTCATGGGAGATGGCGTTTCCACATTTTCTGTTTTCGGGCTGTTTGATGGTCACAATGGAACTGCTGCTGCTATTTATGCCAAGGAGAATCTTCTAAACAACGTTTTAAGTGCAATTCCTTCAGATCTTAACAGAGAAGAGTGGATAGCAGCATTGCCCAGGGCTTTGGTTGCAGGATTTGTGAAAACTGACAAGGATTTTCAACAGAAAGCAAAAACATCGGGAACAACTGTAACCTTTGTGGTTATTGAAGGATGGGTGGTAACAGTTGCATCAGTAGGTGATTCGCGTTGCATACTTGAACCTTCAGAAGGTGGGATTCATTACTTGTCAGCGGATCATAGACTTGAAACCAATGCAGAAGAGAGGGTTCGGATAACCTGCAGCGGGGGTGAGGTGGGTCGGCTAAATACAGGTGGAGGAGCAGAGGTTGGGCCTTTGAGATGTTGGCCTGGTGGTTTGTGTCTTTCGAGATCCATTGGTGATATGGATGTTGGAGAATTTATTGTTCCTGTACCACACGTAAAGCAAGTGAAGCTGTCTAGTGCCGGAGGAAGGATTGTTATCAGCAGTGATGGTGTCTGGGACGCTCTAACTCCAGAAATGGCCCTAGATTGTTGTCGTGGTATGTCAGCAGAGGCCGCAGCACCACATATTGTGAATGAAGCTTTACAAGCAAAGGGTCTTAGAGATGACACAACCTGCATTGTTGTTGATATGTTACCCCAGGAACAACCACATACCACTGTACGAACACATAAGAAACCAATGAAAGGAATTATGAAGATCTTCCGCAAAAAGAGCTCTGAATCATCATCTCGTACCAAACAAGAATATGTAGAGCCAGATATTGTGTGGGAGCTCTATGAGGAAGGATCTGCTATGCTTTCTGAGAGGTTAGAGACAAAATATCCACTCTGCAACATGTTCAAGTTGTTTATCTGTGCTGTGTGTCAAGTAGAGATCAAACCAGGGGAGGGTATCTCAATACATGCGGGGAAGACCATCCCTGGAAAATTATGTCCGTGGGATGGACCTTTTCTTTGCTCAAGTTGCCAAGAGAAGAAGGAAGCCATGGAAGGGTTACGGAAATCAGGAAGACATAGCGGCAGTGACAGTGACGACTAA 1287 0.4569 MFGHGGHHRVPLAVLLKRELVNEKIEKPEIVYGQASQSKKGEDFILLKNECQRVMGDGVSTFSVFGLFDGHNGTAAAIYAKENLLNNVLSAIPSDLNREEWIAALPRALVAGFVKTDKDFQQKAKTSGTTVTFVVIEGWVVTVASVGDSRCILEPSEGGIHYLSADHRLETNAEERVRITCSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDVGEFIVPVPHVKQVKLSSAGGRIVISSDGVWDALTPEMALDCCRGMSAEAAAPHIVNEALQAKGLRDDTTCIVVDMLPQEQPHTTVRTHKKPMKGIMKIFRKKSSESSSRTKQEYVEPDIVWELYEEGSAMLSERLETKYPLCNMFKLFICAVCQVEIKPGEGISIHAGKTIPGKLCPWDGPFLCSSCQEKKEAMEGLRKSGRHSGSDSDD 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271978g00003 428 Gene3D - 31 302 IPR036457 -
Stsc271978g00003 428 SMART PP2C_4 21 291 IPR001932 -
Stsc271978g00003 428 PANTHER PROTEIN PHOSPHATASE 32 292 IPR015655 GO:0004722|GO:0006470
Stsc271978g00003 428 SUPERFAMILY PP2C-like 37 293 IPR036457 -
Stsc271978g00003 428 FunFam probable protein phosphatase 2C 12 32 299 - -
Stsc271978g00003 428 CDD PP2Cc 39 292 IPR001932 -
Stsc271978g00003 428 ProSiteProfiles PPM-type phosphatase domain profile. 31 293 IPR001932 -
Stsc271978g00003 428 Pfam Protein phosphatase 2C 42 283 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271978g00003 Stsc-Chr271978 7046 10841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271978g00003 1 427 PP2C-type Phosphatase Gene Family AT1G47380 75.000 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271978g00003 - - gmx:100796959 704.131