Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271978g00002 ATGGCAAAGAAGAAGATGACGGCAAAGGCTTGTGAATACGAGGAGATTCGGCTTAAGAGGTTGGAGGAGAACAGGAAGAGGATGGAGGCACTCAATCTCCCCAACCTCTCTCAGGCCCTCCACAACTCTCCCCTTTCCAAATCCAATCCCTCTCCGCTGAAGCGCGTCAAGTCACGCACCATCGAGAAGCAGGTGGTTGTGGTGAGGAGGTCCAGCCGCGTCGCCAACATGCCCGCTCCTGTTTACAAAGAAGTGGTTATTGATCGTGTAGTCATATCTAGAAGCCGCAGAAGTGGAAGCTCTTATGGTAGATACAGGGATTATTCAAAGCGGGTATATGCTTCCGATGAAGCCAGAGAGGAAGCCCTAGAAAAGGCTGATAAGATTCAATCAGATTTGCAGTCTGAGTCTGGTCATCCATCCTTCATTAAATCTATGCTCCAGTCTCATGTCACTGGCGGATTCTGGCTGGGTCTTTCAGTCCAGTTTTGTAAGATGCATCTTCCAAAACGAGACGAAACACTTACTTTGATTGATGAGGATGGGGATGAGTATGAAACATTATATTTGGCTCGAAAAACAGGACTTAGTGCTGGATGGAGAGGCTTTGCAATTGCTCATAACTTAGTTGATGGGGACGCTTTGGTTTTCGAACTAATCAACCGCAATACATTCAAGGTGTACATTGTTAGAGTGAATAGTCCTGCAGAGGGTGGAGAGCAATGA 726 0.4697 MAKKKMTAKACEYEEIRLKRLEENRKRMEALNLPNLSQALHNSPLSKSNPSPLKRVKSRTIEKQVVVVRRSSRVANMPAPVYKEVVIDRVVISRSRRSGSSYGRYRDYSKRVYASDEAREEALEKADKIQSDLQSESGHPSFIKSMLQSHVTGGFWLGLSVQFCKMHLPKRDETLTLIDEDGDEYETLYLARKTGLSAGWRGFAIAHNLVDGDALVFELINRNTFKVYIVRVNSPAEGGEQ 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271978g00002 241 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 53 234 IPR044837 -
Stsc271978g00002 241 Coils Coil 11 31 - -
Stsc271978g00002 241 ProSiteProfiles B3 DNA-binding domain profile. 142 233 IPR003340 GO:0003677
Stsc271978g00002 241 Gene3D - 114 234 IPR015300 -
Stsc271978g00002 241 MobiDBLite consensus disorder prediction 35 55 - -
Stsc271978g00002 241 Pfam B3 DNA binding domain 142 231 IPR003340 GO:0003677
Stsc271978g00002 241 MobiDBLite consensus disorder prediction 33 56 - -
Stsc271978g00002 241 SUPERFAMILY DNA-binding pseudobarrel domain 135 233 IPR015300 -
Stsc271978g00002 241 CDD B3_DNA 140 231 IPR003340 GO:0003677
Stsc271978g00002 241 SMART B3_2 142 233 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271978g00002 Stsc-Chr271978 1653 4964 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271978g00002 6 236 B3 DNA Binding Superfamily AT3G19184 53.219 3.09e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc271978g00002 B3 9.7e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271978g00002 - - gmx:100797091 285.034