Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271976g00007 ATGGAATCTCGAGTTCAAGTGAAACAACCACCACTCAATGCTCCCGGAATTTCAGATGACTTGTCTGAGACTCGCAAGATGAATTCTCTGAATGGAAGACTAACAGACAAGTTTGAGGATGAAGTTCCTTTTAGCCCTGAAATAACTTATCACCAGCCTGGGTCTACTTTGGCCGCACGTGGGTCACATTCTGGAGAATCGCCCGCGGTTCACCGCGAAACATTGGGGGGCATTATTTACAGGAGCATACGGCTCGTGGTTTTCTCCAACAGACTCAACTTGCTTATGCCTTTTGGGCCTCTTGCAATTCTTGTTCAGAAATTGACTGGTCATCATGGATGGGTCTTCAGTCTGAGTTTACTGGGGATAATGCCTCTGGCAGAGCGGCTAGGTTATGCCACAGAGCAACTTGCATTTTACACTGGAGATACTGTTGGGGGTCTTTTAAATGCTACATTCGGAAATGCAACAGAATTAATAATCTCATTATATGCTCTGAAAAGTGGACTGCTGCGAGTAGTCCAGCTCTCGTTGCTGGGTTCGATTTTGTCAAACATGTTGCTTGTGCTTGGATGTGCATTCTTAAGCGGTGGTATTGTTTTTAACAAAAAGGAACAAGTGTTTAACAAGGCAGCTGCTACGGTGAACTCAGGATTGCTACTGATGGCAGTTATGGGACTACTTTTTCCAGCTGTTCTTCATTATACACGCACTGAGGTGCATTTTGGGAAGTCGGAACTGGCGCTTTCAAGATTCAGCAGCTGTGTCATGCTTGTGGCCTATGCTGCATACTTATTTTTCCAGTTGAAAAGTCAAAGTCGTCTCTATATCGCTGTGAATGAGGAAGAGGGTGAGGCAGGCGACAACTCAAATGACGATGAATCTCCTGAAATTTCTAAATGGGAATCGATAATCTGGCTTTCGGTTATGACTGCTTGGATATCAATCCTTTCTGAATATTTGGTTGGCGCTATAGAGGGCGCATCTAATGCATGGAACATACCGGTAACATTCATTAGTGTCATTTTGCTTCCACTAGTGGGGAATGCAGCAGAACATGCCAGTGCTATCATGTTTGCCATGAAAGATAAACTAGACATATCCTTGGGAGTAGCAATTGGGTCGTCCACTCAGATATCCATGTTCGTGATACCATTTTGTGTTGTTATGGGCTGGATAATGAGGCAACCATTGGACCTAAACTTCCAACTTTTCGAGACTGCAGCACTATTTCTTACTGTTATAGTTGTCGCCTTCATGTTACAGGAAGGAACTGCAAATTACTTCAAGGGGCTAATGCTTGTTCTTTGCTATCTAATAGTGGCAGCTAGTTTTTATGTACATGTAGATTCCAATTCTGAAGATCAGCATGTGACCTAA 1380 0.4355 MESRVQVKQPPLNAPGISDDLSETRKMNSLNGRLTDKFEDEVPFSPEITYHQPGSTLAARGSHSGESPAVHRETLGGIIYRSIRLVVFSNRLNLLMPFGPLAILVQKLTGHHGWVFSLSLLGIMPLAERLGYATEQLAFYTGDTVGGLLNATFGNATELIISLYALKSGLLRVVQLSLLGSILSNMLLVLGCAFLSGGIVFNKKEQVFNKAAATVNSGLLLMAVMGLLFPAVLHYTRTEVHFGKSELALSRFSSCVMLVAYAAYLFFQLKSQSRLYIAVNEEEGEAGDNSNDDESPEISKWESIIWLSVMTAWISILSEYLVGAIEGASNAWNIPVTFISVILLPLVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFVIPFCVVMGWIMRQPLDLNFQLFETAALFLTVIVVAFMLQEGTANYFKGLMLVLCYLIVAASFYVHVDSNSEDQHVT 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271976g00007 459 NCBIfam calcium/proton exchanger 84 445 - -
Stsc271976g00007 459 NCBIfam calcium/proton exchanger 96 446 IPR004798 GO:0006816|GO:0015369
Stsc271976g00007 459 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 66 450 IPR004713 GO:0006812|GO:0008324|GO:0016020
Stsc271976g00007 459 Pfam Sodium/calcium exchanger protein 304 444 IPR004837 GO:0016020|GO:0055085
Stsc271976g00007 459 Pfam Sodium/calcium exchanger protein 114 269 IPR004837 GO:0016020|GO:0055085
Stsc271976g00007 459 FunFam Vacuolar cation/proton exchanger 291 447 - -
Stsc271976g00007 459 MobiDBLite consensus disorder prediction 1 23 - -
Stsc271976g00007 459 FunFam Vacuolar cation/proton exchanger 143 282 - -
Stsc271976g00007 459 Gene3D - 141 282 IPR044880 -
Stsc271976g00007 459 Gene3D - 289 447 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271976g00007 Stsc-Chr271976 56935 61521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271976g00007 7 455 Antiporters AT1G55730 67.038 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271976g00007 K07300 - gmx:100799276 725.317