Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271976g00002 ATGTCGGCAACACTCAACCTTTCCGCCGTCCCCGCTGTCAAATTCTCCTTCTGCAGCGACAACCGCGCCTGCAACGGAAGATTCCACCGCCATTCTCCGATCCGCGCCATCGCTTCTCCGGTGCCGGCCACATCCGGTAGCCTCTACGAGGTATTGCGAGTCGAGCAGGACGCATCGCCGACGGAGATCAAATCTGCCTTCCGGAGCCTGGCGAAGCTCTACCACCCCGACGTTGCGGCGGTGAGGCGGTTGCCGGATTCTGACGGCGATTCCGGCACTGACGACGGCGACTTCATCGAGATACGGAACGCGTACGAGACGCTGTCAGACTCTTCATCTAGAGCAATGTACGATCGGTCACTGGCCTCCCGGAAGCGGAGGTTTCAGGCGTCGTTGAGCGTGAAGGGGAATTCCGGTTATAACTCGACCCGAAGATGGGAAACGGACCAATGCTGTCTGTGGCCAACAAAGAGGATACACTTCCAATGCTCCAAACCATCAATTGCCTCAAAGAAGTTCTTTGTATGGGGAGAAAAGGTGGTGGTACTTATTGATGAATGGGCAGTAATGGTGGAGTTGAAACCGGAAAGAGATGGACCCAGGGGGCGGAGCCTTAGTACATCATAA 627 0.5598 MSATLNLSAVPAVKFSFCSDNRACNGRFHRHSPIRAIASPVPATSGSLYEVLRVEQDASPTEIKSAFRSLAKLYHPDVAAVRRLPDSDGDSGTDDGDFIEIRNAYETLSDSSSRAMYDRSLASRKRRFQASLSVKGNSGYNSTRRWETDQCCLWPTKRIHFQCSKPSIASKKFFVWGEKVVVLIDEWAVMVELKPERDGPRGRSLSTS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271976g00002 208 SUPERFAMILY Chaperone J-domain 47 124 IPR036869 -
Stsc271976g00002 208 ProSitePatterns Nt-dnaJ domain signature. 98 117 IPR018253 -
Stsc271976g00002 208 SMART dnaj_3 46 113 IPR001623 -
Stsc271976g00002 208 Gene3D DnaJ domain 36 138 IPR036869 -
Stsc271976g00002 208 PRINTS DnaJ domain signature 49 67 IPR001623 -
Stsc271976g00002 208 PRINTS DnaJ domain signature 67 82 IPR001623 -
Stsc271976g00002 208 PRINTS DnaJ domain signature 93 113 IPR001623 -
Stsc271976g00002 208 Pfam DnaJ domain 48 118 IPR001623 -
Stsc271976g00002 208 CDD DnaJ 49 110 IPR001623 -
Stsc271976g00002 208 ProSiteProfiles dnaJ domain profile. 47 121 IPR001623 -
Stsc271976g00002 208 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 19 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271976g00002 Stsc-Chr271976 10011 11359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271976g00002 49 118 C2H2 Transcription Factor Family AT1G74250 42.254 5.03e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271976g00002 - - gmx:100778445 148.673