Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271974g00009 ATGGAGTGGAGCAGGGGCAACACCCTAGCCCGGGGCTCCACCGCCACCGTCTCCATTGCCACCACCATCCACTCTCCTCACGTTTTTGCCGTCAAGTCAGTGGACTTACACCGCTCGGAGCACCTCAAGAAAGAACAGGGGATTCTCTCCACGCTCAACTCTCCTCAAATTGTGGCCTATAAAGGCTGTGATGTCACGCTAGAGAACGGTACCTTCTTTTACAACGTTTTCATGGAGTACGCTCCTCTGGGAACCCTTGCCGACGCTGTTCGGAGGCACAACGGTGGCTTACGCGAGGCTCTAGTGGCGCGTTACACGCATCAAATGTTACTTGGCCTTAAGTACCTTCACTCCAAAGGAATAGTGCATTGCGATTTGAAGGGGCAGAACATCTTGGTGACAGAGCAAGGGGCAAAGATAGCGGATTTTGGTTACTCTCGGAGGGTGGCGGGTTCCGGTGGTGGGGCCGTGATTGCAGGGACGCCTGCATTCATGGCACCTGAAGTGGCACGTGGGGAAGAGCAGGGGTTCCCTGCTGACGTATGGGCACTTGGGTGTACAGTCTTGGAGACCATAACAGGGCAGCCACCCTGGCACTATGCATGTGATGATGACCCTGTTACAGTGCTTTATCGGATCGGTTTCTCCGGTGAGGTGCCAGAAGTTCCAAGCCATGTATCCGAGGAAGGGAAGGATTTCTTGGCGAAATGCTTCAAGAGGGACCCTTGCGAGAGGTGGTCTGTTGAGGAGCTTCTTGGGCATGGATTTGTTTATGCTGCTGAGGAGCATTTTGATTTTGAGCTCGAGTTGGGTGGCTCTGATTTGCATACTCCCATGAGTGTGTTGGATCCTGAATTTTGGGAGAAGATGGAGACAGAACAGGATAATACACAGACAGCAACACCTGATTGTTGTTATTCATGGAGTCCTGTTAGTCCTAGAGACAGGATTCGTGGGTTGTGTGGAGCAGATACAACGGTGTTTGGTGCTTGGGAATGGGATGATGGGTGGATCAGTGTGAGAAGCAATGAGGTGAACGAGTTTGAAGGTGGCTCCAGTGGCAGTAGCATTGGCCAAGAGCCTAATGGAAAAACAAAGCAATGTGGATCAGACACTGTTTACAATGTTATAGAAGAGAATTGTTTGATAGTTTTTCATGAACCCAATATTAACCATGGTTACTTCAGCACACATTCTGATTGCTGTAATAGGAAGTTACTATTTATAATGTTTACTCCACAATGGAAAATTGATTCCCTAAGCACAATTTTTAGCTTGCTTTGCTTTCTGCTTTCACCTTTACCTCCCTCACAATTTTCATACAATGGAGTGAACATATACTAA 1344 0.4874 MEWSRGNTLARGSTATVSIATTIHSPHVFAVKSVDLHRSEHLKKEQGILSTLNSPQIVAYKGCDVTLENGTFFYNVFMEYAPLGTLADAVRRHNGGLREALVARYTHQMLLGLKYLHSKGIVHCDLKGQNILVTEQGAKIADFGYSRRVAGSGGGAVIAGTPAFMAPEVARGEEQGFPADVWALGCTVLETITGQPPWHYACDDDPVTVLYRIGFSGEVPEVPSHVSEEGKDFLAKCFKRDPCERWSVEELLGHGFVYAAEEHFDFELELGGSDLHTPMSVLDPEFWEKMETEQDNTQTATPDCCYSWSPVSPRDRIRGLCGADTTVFGAWEWDDGWISVRSNEVNEFEGGSSGSSIGQEPNGKTKQCGSDTVYNVIEENCLIVFHEPNINHGYFSTHSDCCNRKLLFIMFTPQWKIDSLSTIFSLLCFLLSPLPPSQFSYNGVNIY 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271974g00009 447 CDD STKc_MAPKKK 2 257 - -
Stsc271974g00009 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Stsc271974g00009 447 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 319 - -
Stsc271974g00009 447 ProSiteProfiles Protein kinase domain profile. 3 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271974g00009 447 SMART serkin_6 3 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271974g00009 447 Pfam Protein kinase domain 6 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271974g00009 447 Gene3D Transferase(Phosphotransferase) domain 1 2 308 - -
Stsc271974g00009 447 SUPERFAMILY Protein kinase-like (PK-like) 3 258 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271974g00009 Stsc-Chr271974 36493 37836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271974g00009 1 343 MAP Kinase Kinase Kinase AT1G05100 47.159 2.62e-98 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc271974g00009 Pkinase 2.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271974g00009 K20716 - gmx:100802174 370.933