Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271974g00007 ATGTTCCCAACCTTGGGAGGCTTTTCTGAGAACCCCGCCAATAACACCGATCCATCCATGTCGTCCGATCATAACAATCGAGCGGTTGTGGGCGAAGTCGACTTCTTCTCCGAGAGAAACATATCATCGTCATCCGTTAAGAATCAGATTTCTTCTACTCATGGAAGTCCTTCCCAGTTTAATAATCTCCACGTAAATACTGGTCTGCAACTCCTTACTGCCAACAGTAAAAGCGATCAATCTACGGTGGATGATGGGGTTTCATCAGATGAAGATAAGCGCCCCAAGATCACCCAGCTGGCACAAGTGCGAGAAGAACTTCGACGTGTGATTTCAGAGAACCAAGAGCTAAAGGAGACGCTAAACCATATGAGGAGCAGCTATGCGAATTTGCAAATGCAAGTTGTCTCATTAATGCAACACCAACAGAAACAACAAGTTCCCGAGACTACCACAGAAAATCACGAGGTAGCGAAAGTAAAAGGTGATGATGAGAAAAAGGAAGGGGGTAGCAGTGGAGGTGGAGGCATGATACCAAGACAGTTCCTTGATTTAGTTGCAAGTGGCACAGCTGAAGTAGAAGATCAAGTATCTAATTCTTCTTCAGAAGAAAGAACTCGATCCAGCACACCTCAAAACCATAAAAACAATAATGGCAAGATAGAGACTACTGCTGGAGAGGATTTAGAATCTTCACAACAAGGTTGGGATAATCCCAACAAGCTTCAGAGATTGAGCCCTGCCACCGATCAATCCACTGCAGAAGCCACCATGCGTAAAGCTCGTGTCTCAGTCCGCGCGCGATCGGAAGCCCCTATGATCAGCGACGGGTGCCAATGGCGAAAATACGGGCAGAAGATGGCGAAGGGAAATCCTTGTCCTCGAGCATATTACAGATGCACCATGGCAGTTGGATGCCCAGTTCGTAAACAAGTTCAACGTTGTGCGGAGGATAGAACAATTTTGATAACCACATACGAAGGGACGCACAACCACCCACTGCCGCCAGCTGCGATGGCGATGGCATCGACGACGGCGGCAGCGGCAAGCATGCTTCTGTCCGGGTCAATGTCGAGCGCTGACGGAATAATGAACTCGAGCATGATGGCAAGAGCGATTCTCCCGTCTTCAAGCATGGCAACACTGTCTGCATCAGCACCATTTCCAACGGTCACACTGGATCTCACGCACCAACCCAACGCGTTGCCTTTGCAGTACCACCAAAGGCAGCAACAGCAACAACAACATCCTCACGCGCAATTGCCGCAAGTCATTGCACAAGCGCTCTATAACCAATCCAAATTCTCCGGTCTTCAATTGTCTCAAGATGTTGGCTCTTCCCAAGCTTCAAGGCTACCGTTGAACCCTAACCAACATCCCTTGCTCGCCGACAAGGTAACCGCAATCACCAACGATCCTAACTTCACGGCGGTCCTTGCAGCTGCCATTTCCTCCATCATCGGTGGAGCTCATCAAAATAACAACGCCAACAACTCCGACGCCAATCCCAATATCATCAACAGTGCTACAGTCAGCAGCTTTTCAGGAAATTAG 1554 0.4865 MFPTLGGFSENPANNTDPSMSSDHNNRAVVGEVDFFSERNISSSSVKNQISSTHGSPSQFNNLHVNTGLQLLTANSKSDQSTVDDGVSSDEDKRPKITQLAQVREELRRVISENQELKETLNHMRSSYANLQMQVVSLMQHQQKQQVPETTTENHEVAKVKGDDEKKEGGSSGGGGMIPRQFLDLVASGTAEVEDQVSNSSSEERTRSSTPQNHKNNNGKIETTAGEDLESSQQGWDNPNKLQRLSPATDQSTAEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGTHNHPLPPAAMAMASTTAAAASMLLSGSMSSADGIMNSSMMARAILPSSSMATLSASAPFPTVTLDLTHQPNALPLQYHQRQQQQQQHPHAQLPQVIAQALYNQSKFSGLQLSQDVGSSQASRLPLNPNQHPLLADKVTAITNDPNFTAVLAAAISSIIGGAHQNNNANNSDANPNIINSATVSSFSGN 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271974g00007 517 Coils Coil 100 134 - -
Stsc271974g00007 517 MobiDBLite consensus disorder prediction 154 170 - -
Stsc271974g00007 517 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 67 499 IPR044810 GO:0003700
Stsc271974g00007 517 ProSiteProfiles WRKY domain profile. 269 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc271974g00007 517 MobiDBLite consensus disorder prediction 8 25 - -
Stsc271974g00007 517 MobiDBLite consensus disorder prediction 495 517 - -
Stsc271974g00007 517 MobiDBLite consensus disorder prediction 139 263 - -
Stsc271974g00007 517 Pfam WRKY DNA -binding domain 276 333 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc271974g00007 517 Gene3D WRKY domain 259 336 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc271974g00007 517 MobiDBLite consensus disorder prediction 139 153 - -
Stsc271974g00007 517 FunFam probable WRKY transcription factor 31 259 336 - -
Stsc271974g00007 517 SMART WRKY_cls 274 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc271974g00007 517 MobiDBLite consensus disorder prediction 1 25 - -
Stsc271974g00007 517 MobiDBLite consensus disorder prediction 192 258 - -
Stsc271974g00007 517 SUPERFAMILY WRKY DNA-binding domain 267 335 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc271974g00007 517 MobiDBLite consensus disorder prediction 73 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271974g00007 Stsc-Chr271974 27504 30034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271974g00007 2 498 WRKY Transcription Factor Family AT1G62300 51.803 1.21e-139 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc271974g00007 WRKY 5.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271974g00007 - - gmx:100127376 542.732