Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271974g00006 ATGGCCACCTTAACCTCATCACTATTCCTCTTACTTTCTTCTTCATTCCTCTTAACTTTTTTTGTTAATGCATACTCAACAACAAACAACACAACCCAGCTTCTCTCAAACTATATCCACAAGACTCCCAAGAATAATAAACCACACCTCAACACCATAGACTCTTGCCGGCGAGCCCAAACTAAGTGGGCCGCGAATCCACACGCCTTGGCCGATTGCTCAATTGGTTTTGGCAAAGACTCCATTGGAGGCAAACATGGTAAACTATACATTGTAACCGACCCTTCAGATGATGCAGTGAATCCAAGAAAGGGCACACTTCGTTATGGTGCAATCCAAAGGGAGCCACTATGGATAATGTTCAAGAGAGACATGGTAATTAGGCTTGAGAATGAGCTCATAGTGAATAGCTACAAGAGCATTGATGGAAGAGGAGCCAGAGTTGTGATATCAAACGGTCCTTGCATTACAATACAAGGTGTTAGTAATGTGATTATTCATGGAATTAGAATCCATGATTGTAAACCGGGTAAGGCTGGCCTTGTCAGAAGTAGCCCTGACCATGTTGGCCACCGGCAAGGCTCCGATGGCGACGGCATCAGCATATTTTCATCGTCCAATATTTGGGTTGATCATTGCTTCTTCGCACGTTGCGCTGATGGCCTAATTGATATTATTCATGCTTCAACTGCCATTACCATTTCTAACAACTATTTCACCCAGCATGACAAAGTTATGCTATTAGGACACAATGATCAATACACTGCAGATAAAATAATGAGGGTAACAATAGCCTTCAACCGTTTTGCTAGTGGCCTAACTGAAAGGATGCCAAGGGTAAGATTTGGTTACGCCCATGTGGTAAACAACCGGTATGATGAGTGGAAAATGTATGCTATAGGAGGGAGTTCTAATCCAACCATTTTAAGCGAAGGGAACTATTATATAGCACCAAATGACGATAATGCAAAACAGATTACAAAGAGAGAAGCGAAGCAAAGCTGGAAGAACTGGAAATGGAGGTCTACCAAGGATGTATTCGAAAATGGTGCATATTTTGTGCCATCTGGATATGGGAGTTGTGCCCCAAATTATTCTTATACTCAATCTTTTAATGCTGTTCGAGCGAACTTGGTGCCAGCAATAACTCTCAATGCAGGCCCCTTAAGTTGTGTTGTTGGCAGAGCATGTTAA 1194 0.4238 MATLTSSLFLLLSSSFLLTFFVNAYSTTNNTTQLLSNYIHKTPKNNKPHLNTIDSCRRAQTKWAANPHALADCSIGFGKDSIGGKHGKLYIVTDPSDDAVNPRKGTLRYGAIQREPLWIMFKRDMVIRLENELIVNSYKSIDGRGARVVISNGPCITIQGVSNVIIHGIRIHDCKPGKAGLVRSSPDHVGHRQGSDGDGISIFSSSNIWVDHCFFARCADGLIDIIHASTAITISNNYFTQHDKVMLLGHNDQYTADKIMRVTIAFNRFASGLTERMPRVRFGYAHVVNNRYDEWKMYAIGGSSNPTILSEGNYYIAPNDDNAKQITKREAKQSWKNWKWRSTKDVFENGAYFVPSGYGSCAPNYSYTQSFNAVRANLVPAITLNAGPLSCVVGRAC 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271974g00006 397 Gene3D - 50 390 IPR012334 -
Stsc271974g00006 397 PANTHER PECTATE LYASE 18-RELATED 33 395 IPR045032 GO:0030570
Stsc271974g00006 397 SMART amb_all 124 321 IPR002022 -
Stsc271974g00006 397 Pfam Pectate lyase 133 315 IPR002022 -
Stsc271974g00006 397 SUPERFAMILY Pectin lyase-like 71 396 IPR011050 -
Stsc271974g00006 397 PRINTS Pollen allergen Amb family signature 96 121 IPR018082 -
Stsc271974g00006 397 PRINTS Pollen allergen Amb family signature 73 90 IPR018082 -
Stsc271974g00006 397 PRINTS Pollen allergen Amb family signature 132 148 IPR018082 -
Stsc271974g00006 397 PRINTS Pollen allergen Amb family signature 196 217 IPR018082 -
Stsc271974g00006 397 PRINTS Pollen allergen Amb family signature 368 391 IPR018082 -
Stsc271974g00006 397 PRINTS Pollen allergen Amb family signature 338 362 IPR018082 -
Stsc271974g00006 397 PRINTS Pollen allergen Amb family signature 276 295 IPR018082 -
Stsc271974g00006 397 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271974g00006 Stsc-Chr271974 18281 19766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271974g00006 32 391 Polysaccharide Lyase AT4G22080 65.833 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271974g00006 K01728 - gmx:100807483 594.734