Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271973g00021 ATGAATTCAAATAAGAATAAGCAAAGGAAGAAAAAGCTGTCGGATAAATTGGGATCTCAGTGGAACAAAGATGAACTAGAACGGTTCTATGAGGCATATAGGAAGTATGGAAAAGACTGGAAGAAGGTGGCTGCAGCTGTACGTAACAGATCGGTTGAAATGGTGGAGGCTCTTTACAATATGAATAGGGCTTACCTATCTCTGCCAGAGGGAACAGCTTCTGTTGTTGGTCTCATTGCAATGATGACAGATCACTATAATGTGCTGGAAGAGAGTGATAGTGAAAAAGAGAGTATTGATTCACCAGGATCCCGAAAACCAGTGAAACGAAAGCGTGGAAAAAGTGAGCTTGGTGTCTCAAAAGATTCTATCCAGACTCAGTCAATTGCTTCTAATGACGGTTGCCTCTCTCTATTGAAGAGAAGACGCTTTGATGGTAGCCAGCCTCGTGCAGTCGGGAAAAGGACACCTCGCGTTCCAGTTTACTACTCTCATAAGAAAGATGAAAGGGAAAGTTATGTTTCGCCTAATAAAAGACTGCTGAAGTCAGCCTTTGATGCTAATGATGATGAAGTTGCACATGTTGCAGCGCTGGCATTAACTGAGGCTGCAAAAAGAGGTGGCTCTCCTCAAGTATCCCAAACACCACCCAGAAGATCACAGCAGAAGTTCTCTCCTGTTCAGAGCTGGGAAAGAATGAAACAAAAGTCTGGGACAGTTCCTGCCAAGTTTTATGATGCGTCTTTGGATGAAGAGTTCATGGAAGGTAGTATAGAAAGCAGGGGTGCTGAAAACGGGGAACATGCTAGAGATACTAGCTCCTTGAAGGAAATGGAAGGCAGTGGCACAGTTGAAGTTAATCAGAAACGGAAAAAGGTATACAGAAAGAAAGAGAGAAAGGAAAATGTTGGAACCCATCTTCTTGATGATGGTGGAGAAGCATGTAGTGGCACCGAAGAAGGACTTAATTCTAGTTTGAAGGAAAAAGTTGATGTTGAGGTTACTAATTCAAAGCCTATGAAAAGGAGTAAGAAACTTTTCTTTGGAGCTGATGAAAGTTCTGCTGTGGATGCTTTGCATGCTTTGGCTGATCTGTCATTAATGATACCGGCGTCTACTATGGAATCTGAATCATCTGTCCAGTTGAAGGAAGAAAGAACAACTGTTGATAAAGACGAAAAGCCTGTGGTGCCAGAAGTCACATCGACCAGCCAAAACAGAGATAAAAATAAACATAGTTTGAAACAGAAGGTTGTTCCTTCAGTTCCTGGAGTTGAGCTTTCATCATCCAAAAAGTCTAAAATTGGAAGAGTAACAGTAAATGATAACGACAGCAAGGCTCTGTTTGAATCAAAAGAGCAGCTTCCCTCTGATGATAAAACATGGAAAAGAAAGCGCAAGTCCATGGTTTCAAAGGTTGTCAATGCAAAGCATGATTCTGATCCAAATGATCCGTTACATGATGAGGCTGTGGATGAAGAGAACAAACCACTGATTAAAGGAAAGCACGCTGGTCAGACATCCACCCCTGCCAAGCAAAAGTCAGTAAGATCATCAGATAGTTCTTTGTGCACTGACCAGAAAGATCTGATCGTATCAACTGCAGAAGTTCCACTTGCTAGTTTACCAACTAAACGAATTAGTAAGCGAAAAATGAGTTTGCAGAGAACCTTTACGCCTAAAGAGAAGTCTTCTGAGAACAAAGTAAAAGGTCAACCTAATAAGTTTTCTACCCCATCCCAAGATAGGGCATCGATTCTGAAGGAAAAGCTTTCTAGTTGCTTGTCATCTTATAAGGTTCGCAGGTGGTGTGCATTTGAATGGTTTTATAGTGCAATTGATTATCCATGGTTTTCCAAGCGGGAGTTCATGGAGTACTTAAATCATGTTGGACTAGGGAATATCCCAAGATTGACTCGTGTTGAGTGGAGTGTCATAAAAAGTTCCCTTGGTAAACCACGTAGATTCTCTGAACACTTTCTCCGTGAAGAAAGACACAAGCTTGAACAATATAGGGAATCTGTTAGGAAACATTACACTGAACTACGGACTGGGATCAGGGATGGACTTCCAACAGATTTAGCTAAGCCTTTATATGTTGGACAGCGAGTAATTGCTCTTCATCCAAAAACAAGAGAGATTCATGATGGAAGTGTGCTTACGGTTGACCATGACAAGTGCAGGGTTCAGTTTGACCTTCCTGATTTGGGCGTTGAATTTGTCATGGACATTGATTGTATGCCTTTGAATCCATTGGATAATATGCCAGAAGCTCTAAGGAGGCAAGTTGGTGCTTGTAAATTCCCTTATATAAGTAAAGAACCACAAATGGATGGAAATTCAAATTTCGGGGGCTGCCTGACATGCACTTCAAATAATCCTGCAGAGAAAGCATCCATCTCTTTAAGTAATCTGGCTAAGCAGGGAAAGGGGAATGAAAACCGTTCTGTTGCCCTAACAAAAGCTGCTTTCATTGATCAATTAATGCCGCAAGCAGTGTGTGCTCAACCATGTAACATGGCAGACCATCAAACTAAGGAAGCTGACCTACATGCCCTTTCTGATCTAACACGTTATCTAGATAAAAAGGAAATACTGTTATCGGAGCTTAAAAATACCAACAATGACATATTGGAGAACCAAATTGATTGTGGCAGCTTTAAAGATTCAGAGGCTCTCAGGAAACATTATGCTACGGTACTTGTACAGCTAAAGGAAGCCAGTGAACAGGCATGTGGCTTCCATGGGTTATTATTTATCACAATATTGTCCTTTGACATCGTAGTAACTTTTGATTGA 2799 0.413 MNSNKNKQRKKKLSDKLGSQWNKDELERFYEAYRKYGKDWKKVAAAVRNRSVEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSEKESIDSPGSRKPVKRKRGKSELGVSKDSIQTQSIASNDGCLSLLKRRRFDGSQPRAVGKRTPRVPVYYSHKKDERESYVSPNKRLLKSAFDANDDEVAHVAALALTEAAKRGGSPQVSQTPPRRSQQKFSPVQSWERMKQKSGTVPAKFYDASLDEEFMEGSIESRGAENGEHARDTSSLKEMEGSGTVEVNQKRKKVYRKKERKENVGTHLLDDGGEACSGTEEGLNSSLKEKVDVEVTNSKPMKRSKKLFFGADESSAVDALHALADLSLMIPASTMESESSVQLKEERTTVDKDEKPVVPEVTSTSQNRDKNKHSLKQKVVPSVPGVELSSSKKSKIGRVTVNDNDSKALFESKEQLPSDDKTWKRKRKSMVSKVVNAKHDSDPNDPLHDEAVDEENKPLIKGKHAGQTSTPAKQKSVRSSDSSLCTDQKDLIVSTAEVPLASLPTKRISKRKMSLQRTFTPKEKSSENKVKGQPNKFSTPSQDRASILKEKLSSCLSSYKVRRWCAFEWFYSAIDYPWFSKREFMEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLREERHKLEQYRESVRKHYTELRTGIRDGLPTDLAKPLYVGQRVIALHPKTREIHDGSVLTVDHDKCRVQFDLPDLGVEFVMDIDCMPLNPLDNMPEALRRQVGACKFPYISKEPQMDGNSNFGGCLTCTSNNPAEKASISLSNLAKQGKGNENRSVALTKAAFIDQLMPQAVCAQPCNMADHQTKEADLHALSDLTRYLDKKEILLSELKNTNNDILENQIDCGSFKDSEALRKHYATVLVQLKEASEQACGFHGLLFITILSFDIVVTFD 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271973g00021 932 MobiDBLite consensus disorder prediction 373 521 - -
Stsc271973g00021 932 MobiDBLite consensus disorder prediction 257 275 - -
Stsc271973g00021 932 Gene3D - 1 73 - -
Stsc271973g00021 932 MobiDBLite consensus disorder prediction 506 521 - -
Stsc271973g00021 932 MobiDBLite consensus disorder prediction 90 106 - -
Stsc271973g00021 932 Coils Coil 661 681 - -
Stsc271973g00021 932 MobiDBLite consensus disorder prediction 204 237 - -
Stsc271973g00021 932 MobiDBLite consensus disorder prediction 555 569 - -
Stsc271973g00021 932 SMART DIRP_2 609 710 IPR033471 -
Stsc271973g00021 932 Pfam DIRP 608 709 IPR033471 -
Stsc271973g00021 932 MobiDBLite consensus disorder prediction 552 581 - -
Stsc271973g00021 932 MobiDBLite consensus disorder prediction 379 397 - -
Stsc271973g00021 932 CDD SANT 21 55 IPR001005 -
Stsc271973g00021 932 Pfam Myb-like DNA-binding domain 19 56 IPR001005 -
Stsc271973g00021 932 MobiDBLite consensus disorder prediction 472 500 - -
Stsc271973g00021 932 SUPERFAMILY Homeodomain-like 16 64 IPR009057 -
Stsc271973g00021 932 MobiDBLite consensus disorder prediction 90 123 - -
Stsc271973g00021 932 MobiDBLite consensus disorder prediction 207 235 - -
Stsc271973g00021 932 PANTHER LIN-9 2 911 IPR010561 GO:0006351|GO:0017053
Stsc271973g00021 932 SMART sant 17 65 IPR001005 -
Stsc271973g00021 932 ProSiteProfiles SANT domain profile. 16 53 IPR017884 -
Stsc271973g00021 932 Coils Coil 856 880 - -
Stsc271973g00021 932 MobiDBLite consensus disorder prediction 446 465 - -
Stsc271973g00021 932 MobiDBLite consensus disorder prediction 257 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271973g00021 Stsc-Chr271973 96537 105440 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc271973g00021 DIRP 6.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271973g00021 - - gmx:100789533 1167.91