Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271973g00020 ATGGCACCAACTAGGAAGCCTAGAAGTATCAATAAGCGATTCTCGAGTATAAATGAGGTCTCTCCCGAGAAAGAGGAAATGAATTCAAATAAGAATAAGCAAAGGAAGAAAAAGCTGTCGGATAAATTGGGATCTCAGTGGAACAAAGATGAACTAGAACGGTTCTATGAGGCATATAGGAAGTATGGAAAAGACTGGAAGAAGGTGGCTGCAGCTGTACGTAACAGATCGGTTGAAATGGTGGAGGCTCTTTACAATATGAATAGGGCTTACCTATCTCTGCCAGAGGGAACAGCTTCTGTTGTTGGTCTCATTGCAATGATGACAGATCACTATAATGTGCTGGAAGAGAGTGATAGTGAAAAAGAGAGTATTGATTCACCAGGATCCCGAAAACCAGTGAAACGAAAGCGTGGAAAAAGTGAGCTTGGTGTCTCAAAAGATTCTATCCAGACTCAGTCAATTGCTTCTAATGACGGTTGCCTCTCTCTATTGAAGAGAAGACGCTTTGATGGTAGCCAGCCTCGTGCAGTCGGGAAAAGGACACCTCGCGTTCCAGTTTACTACTCTCATAAGAAAGATGAAAGGGAAAGTTATGTTTCGCCTAATAAAAGACTGCTGAAGTCAGCCTTTGATGCTAATGATGATGAAGTTGCACATGTTGCAGCGCTGGCATTAACTGAGGCTGCAAAAAGAGGTGGCTCTCCTCAAGTATCCCAAACACCACCCAGAAGATCACAGCAGAAGTTCTCTCCTGTTCAGAGCTGGGAAAGAATGAAACAAAAGTCTGGGACAGTTCCTGCCAAGTTTTATGATGCGTCTTTGGATGAAGAGTTCATGGAAGGTAGTATAGAAAGCAGGGGTGCTGAAAACGGGGAACATGCTAGAGATACTAGCTCCTTGAAGGAAATGGAAGGCAGTGGCACAGTTGAAGTTAATCAGAAACGGAAAAAGGTATACAGAAAGAAAGAGAGAAAGGAAAATGTTGGAACCCATCTTCTTGATGATGGTGGAGAAGCATGTAGTGGCACCGAAGAAGGACTTAATTCTAGTTTGAAGGAAAAAGTTGATGTTGAGGTTACTAATTCAAAGCCTATGAAAAGGAGTAAGAAACTTTTCTTTGGAGCTGATGAAAGTTCTGCTGTGGATGCTTTGCATGCTTTGGCTGATCTGTCATTAATGATACCGGCGTCTACTATGGAATCTGAATCATCTGTCCAGTTGAAGGAAGAAAGAACAACTGTTGATAAAGACGAAAAGCCTGTGGTGCCAGAAGTCACATCGACCAGCCAAAACAGAGATAAAAATAAACATAGTTTGAAACAGAAGGTTGTTCCTTCAGTTCCTGGAGTTGAGCTTTCATCATCCAAAAAGTCTAAAATTGGAAGAGTAACAGTAAATGATAACGACAGCAAGGCTCTGTTTGAATCAAAAGAGCAGCTTCCCTCTGATGATAAAACATGGAAAAGAAAGCGCAAGTCCATGGTTTCAAAGGTTGTCAATGCAAAGCATGATTCTGATCCAAATGATCCGTTACATGATGAGGCTGTGGATGAAGAGAACAAACCACTGATTAAAGGAAAGCACGCTGGTCAGACATCCACCCCTGCCAAGCAAAAGTCAGTAAGATCATCAGATAGTTCTTTGTGCACTGACCAGAAAGATCTGATCGTATCAACTGCAGAAGTTCCACTTGCTAGTTTACCAACTAAACGAATTAGTAAGCGAAAAATGAGTTTGCAGAGAACCTTTACGCCTAAAGAGAAGTCTTCTGAGAACAAAGTAAAAGGTCAACCTAATAAGTTTTCTACCCCATCCCAAGATAGGGCATCGATTCTGAAGGAAAAGCTTTCTAGTTGCTTGTCATCTTATAAGGTTCGCAGGTGGTGTGCATTTGAATGGTTTTATAGTGCAATTGATTATCCATGGTTTTCCAAGCGGGAGTTCATGGAGTACTTAAATCATGTTGGACTAGGGAATATCCCAAGATTGACTCGTGTTGAGTGGAGTGTCATAAAAAGTTCCCTTGGTAAACCACGTAGATTCTCTGAACACTTTCTCCGTGAAGAAAGACACAAGCTTGAACAATATAGGGAATCTGTTAGGAAACATTACACTGAACTACGGACTGGGATCAGGGATGGACTTCCAACAGATTTAGCTAAGCCTTTATATGTTGGACAGCGAGTAATTGCTCTTCATCCAAAAACAAGAGAGATTCATGATGGAAGTGTGCTTACGGTTGACCATGACAAGTGCAGGGTTCAGTTTGACCTTCCTGATTTGGGCGTTGAATTTGTCATGGACATTGATTGTATGCCTTTGAATCCATTGGATAATATGCCAGAAGCTCTAAGGAGGCAAGTTGGTGCTTGTAAATTCCCTTATATAAGTAAAGAACCACAAATGGATGGAAATTCAAATTTCGGGGGCTGCCTGACATGCACTTCAAATAATCCTGCAGAGAAAGCATCCATCTCTTTAAGTAATCTGGCTAAGCAGGGAAAGGGGAATGAAAACCGTTCTGTTGCCCTAACAAAAGCTGCTTTCATTGATCAATTAATGCCGCAAGCAGTGTGTGCTCAACCATGTAACATGGCAGACCATCAAACTAAGGAAGCTGACCTACATGCCCTTTCTGATCTAACACGTTATCTAGATAAAAAGGAAATACTGTTATCGGAGCTTAAAAATACCAACAATGACATATTGGAGAACCAAATTGATTGTGGCAGCTTTAAAGATTCAGAGGCTCTCAGGAAACATTATGCTACGGTACTTGTACAGCTAAAGGAAGCCAGTGAACAGGTTTCTAATGCTCTCCTTCATCTGAGGCAGCGGAATACTTACACAGGAAACACCCTACCATGGATGAAACCCCAAGCAAATTTCAACGTCCATGATGGCATTCCCAGTATGTTGGATAGTTCTCTAGCTCAAGAGTTAGGATCAACTGTTATTGAAATTATTAAAGGATCCAAGCTAAAAGCACAAGCAATGATGGATGCCGCATTTCAGGCCTTAGCTTCAGTGAAGGAAGGCGAAGATGCTTTCCTCAGGATTGGACAGGTATTGGATTCTATCAATTATCAGCAGTTGGCCCCCAACTCCTCATTACCTGTGACAAAGTCCCAAGAGCAAGGGAATGGAAGTCTCGATCATCATAGTCGATCAATTTGCTCTTCATCTGAGCCTTTACTTAATGATACGTCTGGTCCAAAATTGCATAATGATTCTGACAAAGGAGACGCTCAAATTCCTTCGGAGCTCATCACTTCCTGCGTCGCCATATTGATCATGATCCAGACTTGTACTGAACGACAATATCCTCCATCCGATGTGGCTCAGATATTAGATTCTGCTGTCACCAGTCTGCATCCATGCTGTCCCCAAAACCTTCCTATTTACAGAGAAATTCAAACGTGCATAGGAAGGATTAAGACCCAGATTTTAGCTCTCATCCCTACATCTACATGA 3477 0.4188 MAPTRKPRSINKRFSSINEVSPEKEEMNSNKNKQRKKKLSDKLGSQWNKDELERFYEAYRKYGKDWKKVAAAVRNRSVEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSEKESIDSPGSRKPVKRKRGKSELGVSKDSIQTQSIASNDGCLSLLKRRRFDGSQPRAVGKRTPRVPVYYSHKKDERESYVSPNKRLLKSAFDANDDEVAHVAALALTEAAKRGGSPQVSQTPPRRSQQKFSPVQSWERMKQKSGTVPAKFYDASLDEEFMEGSIESRGAENGEHARDTSSLKEMEGSGTVEVNQKRKKVYRKKERKENVGTHLLDDGGEACSGTEEGLNSSLKEKVDVEVTNSKPMKRSKKLFFGADESSAVDALHALADLSLMIPASTMESESSVQLKEERTTVDKDEKPVVPEVTSTSQNRDKNKHSLKQKVVPSVPGVELSSSKKSKIGRVTVNDNDSKALFESKEQLPSDDKTWKRKRKSMVSKVVNAKHDSDPNDPLHDEAVDEENKPLIKGKHAGQTSTPAKQKSVRSSDSSLCTDQKDLIVSTAEVPLASLPTKRISKRKMSLQRTFTPKEKSSENKVKGQPNKFSTPSQDRASILKEKLSSCLSSYKVRRWCAFEWFYSAIDYPWFSKREFMEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLREERHKLEQYRESVRKHYTELRTGIRDGLPTDLAKPLYVGQRVIALHPKTREIHDGSVLTVDHDKCRVQFDLPDLGVEFVMDIDCMPLNPLDNMPEALRRQVGACKFPYISKEPQMDGNSNFGGCLTCTSNNPAEKASISLSNLAKQGKGNENRSVALTKAAFIDQLMPQAVCAQPCNMADHQTKEADLHALSDLTRYLDKKEILLSELKNTNNDILENQIDCGSFKDSEALRKHYATVLVQLKEASEQVSNALLHLRQRNTYTGNTLPWMKPQANFNVHDGIPSMLDSSLAQELGSTVIEIIKGSKLKAQAMMDAAFQALASVKEGEDAFLRIGQVLDSINYQQLAPNSSLPVTKSQEQGNGSLDHHSRSICSSSEPLLNDTSGPKLHNDSDKGDAQIPSELITSCVAILIMIQTCTERQYPPSDVAQILDSAVTSLHPCCPQNLPIYREIQTCIGRIKTQILALIPTST 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271973g00020 1158 ProSiteProfiles SANT domain profile. 42 79 IPR017884 -
Stsc271973g00020 1158 MobiDBLite consensus disorder prediction 1038 1083 - -
Stsc271973g00020 1158 MobiDBLite consensus disorder prediction 233 261 - -
Stsc271973g00020 1158 MobiDBLite consensus disorder prediction 116 148 - -
Stsc271973g00020 1158 MobiDBLite consensus disorder prediction 1038 1073 - -
Stsc271973g00020 1158 MobiDBLite consensus disorder prediction 1 44 - -
Stsc271973g00020 1158 MobiDBLite consensus disorder prediction 18 44 - -
Stsc271973g00020 1158 Coils Coil 882 906 - -
Stsc271973g00020 1158 MobiDBLite consensus disorder prediction 472 491 - -
Stsc271973g00020 1158 MobiDBLite consensus disorder prediction 283 301 - -
Stsc271973g00020 1158 PANTHER LIN-9 1 1157 IPR010561 GO:0006351|GO:0017053
Stsc271973g00020 1158 MobiDBLite consensus disorder prediction 116 132 - -
Stsc271973g00020 1158 Gene3D - 5 99 - -
Stsc271973g00020 1158 SMART sant 43 91 IPR001005 -
Stsc271973g00020 1158 MobiDBLite consensus disorder prediction 230 263 - -
Stsc271973g00020 1158 SMART DIRP_2 635 736 IPR033471 -
Stsc271973g00020 1158 MobiDBLite consensus disorder prediction 498 526 - -
Stsc271973g00020 1158 Coils Coil 927 947 - -
Stsc271973g00020 1158 MobiDBLite consensus disorder prediction 283 350 - -
Stsc271973g00020 1158 FunFam Protein ALWAYS EARLY 3 isoform A 3 99 - -
Stsc271973g00020 1158 MobiDBLite consensus disorder prediction 532 547 - -
Stsc271973g00020 1158 MobiDBLite consensus disorder prediction 399 547 - -
Stsc271973g00020 1158 MobiDBLite consensus disorder prediction 405 423 - -
Stsc271973g00020 1158 MobiDBLite consensus disorder prediction 578 607 - -
Stsc271973g00020 1158 Coils Coil 687 707 - -
Stsc271973g00020 1158 Pfam Myb-like DNA-binding domain 45 82 IPR001005 -
Stsc271973g00020 1158 CDD SANT 47 81 IPR001005 -
Stsc271973g00020 1158 MobiDBLite consensus disorder prediction 581 595 - -
Stsc271973g00020 1158 Pfam DIRP 634 735 IPR033471 -
Stsc271973g00020 1158 SUPERFAMILY Homeodomain-like 41 90 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271973g00020 Stsc-Chr271973 96455 105440 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc271973g00020 DIRP 8.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271973g00020 - - gmx:100789533 1498.41