Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271973g00018 ATGACGGATTCGCAGTCCAATTCGGAGATTTTCAGTGTTCGGATCGTCTCCATCGACTATTACATGGCTCCGCCGATCCAAGGCGCTGATATCTGTTACAGCAGCTTCCACGGTGGAAAAGTGAAGGAGGTTCCTGTAATAAGAGTGTATGGTTCTACTCCTTCTGGCCAGAAGACTTGCTTGCACATTCACCAAGCTTTGCCTTACATGTATGTGCCGTGTTCGGATGTACCACTTCAACCAGACCAAGAAGGTGATGCATACACGTATAAGGTTGCTGCTTCTCTCGAGAAAGCCTTGCAGCTTAAAGGCGGCCTTGGTTCAACAAGGCAGCATGTGCATGGCTGCAGCCTTGTACGAGCAAGAAGATTATATGGTTACCACTCATTTGAGGAGTTATTCGCTGGTGCTGTTCTTGACAAATGTTTACAACCTCATGAATCCCATATTCCCTATATTCTTCAGTTTTTGGTTGATTACAACTTGTATGGCATGGGTTATTTGCACCTAACAAAGATGAAATTTCGCCATCCCATACCAGACTCTCCTCACAAGAAATCAAGTATTTATAGCAAGCATATAATGGCAGATTCAGGTGCTGATATATGTTTGGAGTCAAAGATGTGGATATCTTCCACTGTTCCATCTGATTGGATGTGGTCATCTGCTGGTGAATTTAGTTCTTCATCAAAGGATAAGCCTTACTGCCCTAAAAGGCAAAGCACATCTGAGCTTGAAGGAGATGCTACTGTAGATGAGATTCTCAATCAGCAATTTATAATGTATTCATCACTCTCACAAACATGCTCAGATGTGAAAATGGTTCAATCACTTGTACCAATATGGGAGGAACAGCAGAAAAGGACTGGAATTAATGAGGCTACTATGCCTCCTGACCCTGGAAAACCACTTCCAGAAGATGTTATGAAACTTCTTTCTGCTGGTCTTGACTTTGAGAAAAGACTTTTTGAATTATGTGGTGAAGCTGGAACCACCGTGTCTTCAACTCCTTCTCAGAAAGAGTTAAGAGAAACGGACATAATAGGCTCAGCATCACCACCATGTTCATTAAATGAGGCCAAAATACATGAAGATGGGTCTGATAACAGCTTCAGTTTGCTACCTGTGGACAAAATGCATTCATCTGAAATAACTGGAAGTTTGGACATAAAGGCTGCAGAATGGGAAGCCCAACATCTTCTTAAGTGGCTTGCAACTTCTCAAGCTGCAGAAGATATAAATTCCGATGATGAACTTGTTTGTGAAACGATGCTGAGTCCCCTGTTACCGGCTGCCACGATTGATAAAATGGTGGAGAAGGCTAGCATGCAATATGAGAGTGAGTCCCAAAAGGAATGTCAGGATATTCTAGATTCAGTTGATGATATGCTTGAGTTGAAGTTTTCTAAGCAAAAGCCTTCTTGTTCAATTGATCACAGTGATCCTATTGAAGTGTCAACTAAGATTACATTACCCCAAGTTGATGGTTCAGCTGATGATGATTATTCAATTCCATGTGCTAGTTTGGCTGGAACCTCTTCTGCAGCAGAGAGAAATAGTGAATCCAGAAGGCCTTCTGAGTACCATGTCAGGCACAGCACCGATACAGCCGTAGTTAGTAAAAATAAAAGGAGTAAGCAATGGGGGTCTTTGCCTTTTTCAGTGGCTGATAAGGTTAAATGCAGCAGAGATCAAGCTAGTTTGCAAGTGACTAGCCCATTTGAAAGTCAAAGTGGAGATTCTACGGACTCTGATAACGGGTTTAGAAAGAGTACTCGTATTACAAGAAACGTGGGCAGAACTGTTTCAGAATCAAAAGAACACAGATTTGTTAACTGCTCTTTGCGGGACTTGATGAGGCGGAAGCGATCCTTTCGAATTGAACAAACTGAATGCGATTCTGGAACATCTAAAAAGCTTCTTTTGGACAGGTGTGAGGGACCGAATACCTGCCGCTGGGAAAAACAAATGGATTTGAAAAAAATTCAAACCAACGAGGAAGAAACAAAACCACTTAAAAATTGTGATCTTAAATTGAGTAATCATGATAATTTAGTGTGTCAGAAACTCCCACTTCCAGATGGTAAGGATAGTTTCTTACAGGCTGATATGCAAAGGGATGAATGTTTTTCTGAAAATGAAAATGGGGCTCCAGAAGAAAGTGAGCTGTTAAGGACCTCTGAAAATCAAGGTTCTTTAGTGTATATGTCAAATCCCTGTCCAGATGTTCAGTTATTGACAACAGATACCGATCATAAAATCATAGCTCTTGAGAGGTGTCAACAAACTTACTCTGCAGCTTCAAGCAGTGTACAGAACTCATCCATTGACGATAATGTCTTATGCAAGCATAATTGCATGGATCAGGATTCTCATGGAATCATATCTTTTCCGCAACAAGTGTTGCTTAATGACAGAGTTGATAATAAAAAGCATGGTGTAGATTTACTGGGTGAGAAGACTATTGTCTCGGAGCCTATTGATGATGACCTGAAGGATAAACGCATGAAATTAACTGAAGTAAATGTAGCTAAGGAAACCCCCTTGACTGACAAGAATCTTGAAAATCTTTTGCCCTTGCCAACCATGTCTGATTCCCATTCACATTTGGATGAGGAAAGCTGTGATGAAATGTCAGGGAATGGTCCTGATGTTTTTCTTCCCATTTCCACAAAGGATTCCCAGAAAGAAATGGAGACTTGGAATAAATGTGTTACAATTAAAGCTCCTCGATCTCATGGGAAAAAGGATGTTGCTATTCACTATCAAAATGATGGCTCTCCCCTGTACCTGTTAACACCTAATATTTTGCCTCCATCTGTAACCAGTGTGCAGAGATGGCTATCTCTAGATGAGAGAGATCACACAAGTCAAGAAACTGATGTAGGGGCCAAGGATGTGCCTGAACACACTTCTGGACCTACTCTTCAGCCTAAGCTTTATGATGATAGTAGTGCAGAAAAGAAACCACCATGCAATAATGGAGGACAAACAGAAACAGTAAAGGTGAGCCTGGATGGTTCACAGGATAATTCTCAGATATCAGGCCCTATGAGGAGATCAAATTCTACCCCTCTGAGTCAAATCGGGTTTCGAGACCCTGCAATTATTGGATGTGGACAGCAATTGACATTACTCAGTATAGAGGTTCTTGCAGAATCAAGAGCAGACCTTTTACCTGACCCTCAGTTTGACGCTATCAACATTGTAGTTCTTGGTTTTCAGAATGATTGTGATTCTATTGTCGAAGTTCTCGTTCTTTTGCATAGTAAACTTCAACCTTGTCAGAGAAGTTTTGATGGCTTAGCAGGCTGCAAAATGCTGGTCTTTTCTGATGAAAAGCACTTGTTAAAGGAATTTATAAATATCGTTTCTTCATCTGACCCTGATATTCTGATGGGTTGGGATATTCAAGGGTATTCTCTTGGTTTCCTGGCAGAAAGGGCTTCACACTTTGGTCTAGGATTACTTAACAGTTTGTCACGAACTCCATCTGATTCATGGGTTGCTTCTGAAGATGTGAAAGCTTCTGAAAAAGGTATCTTGGAATTAGATGACCCAGATACTCCTAGTATAGATTGTTGTGTACAAGAAAATTCAATAATTGAGGATGAATGGGGAAGGACACATGCAAGTGGAGTTCATGTTGGTGGCAGAATTGTCCTTAATGTATGGCGGCTGATCCGTGGAGAAGTTAAGCTGAACTTATATTCAGTTGAAGCTGTCACTGAAGCTGTATTGAGGCGGAAAATTCCATTCATTCACAACAAGGTGCTGACAAGATGGTTTTCAAGTGGTCCTGGTCGAGCAAGATATCAGTGTATCAAATATGTTGTAGAAAGAGCAAAGCTGAATCTTGAGATCTTAAACCAACTTGATATGGTGAATCGGACATCAGAACTTGCTCGTGTCTTTGGCATAGACTTTTTTTCTGTCCTGTCACGTGGTTCACAATACCGGGTTGAATCCATGCTTTTGAGGTTGGCCCATACACAAAACTATCTTGCTATCTCACCTGGAAACCAACAGGTTGCTTCTCAACCTGCCATGGAGTGCCTGCCACTAGTGATGGAACCGGAGTCAGGATTTTATTCTGATCCTGTTGTTGTATTTGACTTCCAGTCTTTATATCCATCTATGATAATCGCATACAACCTTTGCTTTTGTACATGTCTTGGCAAAGTTGTAGCTTCGAAGGCTAACACGCTTGGGATCAGTTCATTTTCACCAGAGCAACATGTTCTTCAGTATTTGAAAGATCAAATTTTGCTCACTCCAAATGGTGTTATGTTTGTACCTTCCAAGGTTCGCAGAGGTGTGCTTCCCCGCTTATTGGAAGAGATCTTGTCAACCAGAATAATGGTGAAACAAGCAATTAAAAAACTGGTCCCCTCAGAGCAAGTGCTTCAGCGGATATTTAATTCAAGGCAGCTTGCATTGAAGCTCATATCCAATGTAACATATGGTTACACTGCTGCTGGATTTAGTGGTCGCATGCCTTGTGCAGAACTTGCAGACAGTATTGTTCAATGTGGCCGTAGTACACTGGAGAGGGCCATCTCATTCGTAAATCTACATGAAAACTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTTCTTAAAGGACGCACTATCAAAGAATCTTTCCAAATTGGGAGTGAGATTGCTTCGGCTATCACTGCTATGAATCCTAGTCCAGTTACCCTGAAGATGGAGAAAGTTTATCAACCTTGTTTCCTCCTGACAAAGAAGCGATATGTTGGCTACAGTTACGAAAGCCCTGAACAAATTGAACCTGTTTTTGATGCTAAGGGTATTGAGACAGTCCGGAGGGACACGTGTGGTGCAGTTGCAAAGATACTGGAACAGTCTCTGAGATTGTTTTTTCAGCATCAGGATTTATTGGAGGTCAAGTGTTACTTGCAACGTCAGTGGAAGAGGATACTTTCTGGAAGATTCTCCCTGAAAGATTTTATCTTTGCAAAGGAGGTTCGTTTGGGTACCTACAGTGGAAGGATCTCTTCACTTCCTCCCGCTGCAATTGTGGCTACTAAGGCAATGCGATCTGACCGTAGGGCAGAACCACGATATGCTGAGAGAATACCTTATGTTGTAATCCATGGTGAGCCTGGGGCCCGCCTGTCTGATATGGTTGTGGATCCACTGGAAGTGTTGGCAATTGATTCTCCATTTAGAATAAATGATCTATATTACATTAACAAGCAAATAATACCAGCCTTGCAGCGTGTCTTTGGCCTTGTTGGTGCTGACCTGATACAGTGGTTTTTAGAGATGCCCCGCCCCTTAAGGGAAGCATCTGTAAAGAATAAGTTCTCTTCAAATTTCCAGAGAACCAGAATTGATTATTATTATCTCTCGAAACATTGTATAGTATGTGGCGAGTTGGTCCAGGCATTAGCACATTTTTGTAGTCGATGTTCCGAAAATGAAGTAGCTGCTGCAACAGCAGTGATTAGTAAAACTTCAAAGTTGGAGCGAGAGATGCAACATCTTGTTGCTATATGTCACCACTGTGGAGGTGGCGATAGGCTACTCGAAAGCGGGGTGAAGTGCACGTCCATTGCATGCGAAGTGTTCTATGAGAGACGAAAAGTTCAGAAAGAATTATTAGCTGCCACTGATGTTGCTGCAGAGAAAGGCTTCTATCCGAAATGCACGGTAGAATGGTTCTAA 5709 0.4169 MTDSQSNSEIFSVRIVSIDYYMAPPIQGADICYSSFHGGKVKEVPVIRVYGSTPSGQKTCLHIHQALPYMYVPCSDVPLQPDQEGDAYTYKVAASLEKALQLKGGLGSTRQHVHGCSLVRARRLYGYHSFEELFAGAVLDKCLQPHESHIPYILQFLVDYNLYGMGYLHLTKMKFRHPIPDSPHKKSSIYSKHIMADSGADICLESKMWISSTVPSDWMWSSAGEFSSSSKDKPYCPKRQSTSELEGDATVDEILNQQFIMYSSLSQTCSDVKMVQSLVPIWEEQQKRTGINEATMPPDPGKPLPEDVMKLLSAGLDFEKRLFELCGEAGTTVSSTPSQKELRETDIIGSASPPCSLNEAKIHEDGSDNSFSLLPVDKMHSSEITGSLDIKAAEWEAQHLLKWLATSQAAEDINSDDELVCETMLSPLLPAATIDKMVEKASMQYESESQKECQDILDSVDDMLELKFSKQKPSCSIDHSDPIEVSTKITLPQVDGSADDDYSIPCASLAGTSSAAERNSESRRPSEYHVRHSTDTAVVSKNKRSKQWGSLPFSVADKVKCSRDQASLQVTSPFESQSGDSTDSDNGFRKSTRITRNVGRTVSESKEHRFVNCSLRDLMRRKRSFRIEQTECDSGTSKKLLLDRCEGPNTCRWEKQMDLKKIQTNEEETKPLKNCDLKLSNHDNLVCQKLPLPDGKDSFLQADMQRDECFSENENGAPEESELLRTSENQGSLVYMSNPCPDVQLLTTDTDHKIIALERCQQTYSAASSSVQNSSIDDNVLCKHNCMDQDSHGIISFPQQVLLNDRVDNKKHGVDLLGEKTIVSEPIDDDLKDKRMKLTEVNVAKETPLTDKNLENLLPLPTMSDSHSHLDEESCDEMSGNGPDVFLPISTKDSQKEMETWNKCVTIKAPRSHGKKDVAIHYQNDGSPLYLLTPNILPPSVTSVQRWLSLDERDHTSQETDVGAKDVPEHTSGPTLQPKLYDDSSAEKKPPCNNGGQTETVKVSLDGSQDNSQISGPMRRSNSTPLSQIGFRDPAIIGCGQQLTLLSIEVLAESRADLLPDPQFDAINIVVLGFQNDCDSIVEVLVLLHSKLQPCQRSFDGLAGCKMLVFSDEKHLLKEFINIVSSSDPDILMGWDIQGYSLGFLAERASHFGLGLLNSLSRTPSDSWVASEDVKASEKGILELDDPDTPSIDCCVQENSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVEAVTEAVLRRKIPFIHNKVLTRWFSSGPGRARYQCIKYVVERAKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVFDFQSLYPSMIIAYNLCFCTCLGKVVASKANTLGISSFSPEQHVLQYLKDQILLTPNGVMFVPSKVRRGVLPRLLEEILSTRIMVKQAIKKLVPSEQVLQRIFNSRQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRSTLERAISFVNLHENWNAKVIYGDTDSMFVLLKGRTIKESFQIGSEIASAITAMNPSPVTLKMEKVYQPCFLLTKKRYVGYSYESPEQIEPVFDAKGIETVRRDTCGAVAKILEQSLRLFFQHQDLLEVKCYLQRQWKRILSGRFSLKDFIFAKEVRLGTYSGRISSLPPAAIVATKAMRSDRRAEPRYAERIPYVVIHGEPGARLSDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFGLVGADLIQWFLEMPRPLREASVKNKFSSNFQRTRIDYYYLSKHCIVCGELVQALAHFCSRCSENEVAAATAVISKTSKLEREMQHLVAICHHCGGGDRLLESGVKCTSIACEVFYERRKVQKELLAATDVAAEKGFYPKCTVEWF 1902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271973g00018 1902 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 5 1895 IPR030559 GO:0006281|GO:0016035|GO:0019985
Stsc271973g00018 1902 MobiDBLite consensus disorder prediction 520 539 - -
Stsc271973g00018 1902 PRINTS DNA-directed DNA-polymerase family B signature 1533 1541 IPR006172 GO:0000166|GO:0003676|GO:0003887
Stsc271973g00018 1902 PRINTS DNA-directed DNA-polymerase family B signature 1368 1381 IPR006172 GO:0000166|GO:0003676|GO:0003887
Stsc271973g00018 1902 PRINTS DNA-directed DNA-polymerase family B signature 1477 1489 IPR006172 GO:0000166|GO:0003676|GO:0003887
Stsc271973g00018 1902 SMART polmehr3 1060 1547 IPR006172 GO:0000166|GO:0003676|GO:0003887
Stsc271973g00018 1902 MobiDBLite consensus disorder prediction 509 543 - -
Stsc271973g00018 1902 MobiDBLite consensus disorder prediction 953 1023 - -
Stsc271973g00018 1902 Gene3D - 1070 1351 IPR036397 GO:0003676
Stsc271973g00018 1902 FunFam DNA polymerase 1050 1351 - -
Stsc271973g00018 1902 FunFam DNA polymerase zeta 1435 1494 - -
Stsc271973g00018 1902 FunFam DNA polymerase 1610 1778 - -
Stsc271973g00018 1902 Pfam DNA polymerase family B 1309 1756 IPR006134 GO:0000166|GO:0003677
Stsc271973g00018 1902 Gene3D Helix hairpin bin 1434 1494 - -
Stsc271973g00018 1902 SUPERFAMILY Ribonuclease H-like 27 1314 IPR012337 -
Stsc271973g00018 1902 CDD DNA_polB_zeta_exo 1040 1290 - -
Stsc271973g00018 1902 Pfam C4-type zinc-finger of DNA polymerase delta 1801 1874 IPR025687 -
Stsc271973g00018 1902 ProSitePatterns DNA polymerase family B signature. 1535 1543 IPR017964 GO:0000166|GO:0003676
Stsc271973g00018 1902 MobiDBLite consensus disorder prediction 568 585 - -
Stsc271973g00018 1902 Gene3D - 1610 1771 IPR042087 -
Stsc271973g00018 1902 SUPERFAMILY DNA/RNA polymerases 1355 1767 IPR043502 -
Stsc271973g00018 1902 Gene3D Palm domain of DNA polymerase 1354 1599 IPR023211 -
Stsc271973g00018 1902 Gene3D DNA Polymerase, chain B, domain 1 30 131 - -
Stsc271973g00018 1902 Gene3D DNA Polymerase, chain B, domain 1 132 177 - -
Stsc271973g00018 1902 MobiDBLite consensus disorder prediction 568 596 - -
Stsc271973g00018 1902 Pfam DNA polymerase family B, exonuclease domain 1104 1164 IPR006133 -
Stsc271973g00018 1902 CDD POLBc_zeta 1316 1763 - -
Stsc271973g00018 1902 MobiDBLite consensus disorder prediction 990 1023 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271973g00018 Stsc-Chr271973 70896 82547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271973g00018 1079 1884 Core DNA Replication Machinery Family AT5G63960 27.976 1.09e-84 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271973g00018 K02350 - gmx:100777934 2731.05