Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271973g00013 ATGCAAGATATTTTCGGATCAGTTCGCCGATCCCTGGTGTTCCGTCCTTCGCCTGAGAACGAAGACCACTCGCTTGGAGCCGGAGGAACCCTAGTTGACAAGATCGGCTACTGCATACGCAATTCTAGAGTCTTCTCGAAGCCCTCACTCTCGCCACCGTCCTTGCCGGCGATTCACAAGGACGTTGCTGCTGCTGCTGCTCCGCCGCCGCCTACGATCCGATGGCGCAAGGGCGAGTTGATCGGTTGCGGCGCCTTTGGCCAAGTTTACGTTGGAATGAATCTCGATTCTGGAGAGCTTTTAGCGGTTAAACAGGTTTTGATTGCAGCGAGTAGTGCTTCCAAGGAGAAGGCACAGGCTCACGTAAAAGAGCTCGAGGAAGAAGTTAAGCTTCTTAAAGATCTTAAACATCCCAACATTGTTAGATATTTGGGTACAGTTAGAGAGGAGGACACCTTAAATATTCTCCTGGAGTTTGTCCCTGGTGGATCCATATCATCACTGCTGGGGAAATTTGGAGCTTTCCCTGAGGCAGTCATAAGAACTTACACAAAGCAGCTGCTGCTTGGACTTGAGTACTTGCACACAAACGGAATCATGCACAGAGACATTAAGGGGGCCAATATTCTTGTAGATAATAAAGGTTGCATAAAACTCGCAGATTTTGGGGCATCCAAACAAGTTGTCGAGCTGGCTACTATTTCCGGTGCCAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAGGTTATTCTCCAGACTGGACATAGCTTCTCTGCTGACATATGGAGTGTGGGTTGCACTGTGATTGAGATGGCCACTGGAGAGCCTCCCTGGAAACAACAATACCAACAAGAGGTCGCTGCTCTCTTCCATATAGGGACGACTAAGTCTCATCCGCCAATCCCTGATCATCTCTCTGCTGGAGCCAAAGATTTTCTGCTAAAATGTTTGCAGAAGGAACCGTGTTTGAGGCCATCAGCATCAGAACTACTGCAGCATCCCTTTGTTACTGGTGAACCTATGGATTCTCTTCCTAAACCATCTACTGCCGTGGAAAATTTTGAAGCTTCATCATCTTGTGCTCCAAATGCTGAATCCTTCCTTCGTTGCTCAAATGTGAATCTTGAGGCCTCGGGAAATAACGAGTTGTGGGGACTTAGCAACGATGACGACGACATGTGTATGATTGATGACGACGAGGAGTTCTCTCAGAATGATGTCAAACATGGACCTTTGACCTCAGAAAATATTGAGAGTTTCAACCCAATGTCAAATCCCTCTGATGATTGGGGGTGTAAGTTTGATGGAAGTCCGGAATTGGAGCATAAAGGAGTCAGTTTTGGCACAGATGAAAATGATAGGTCACTAGGTCACTTAGGGACTTATAACAAGGAGCAGGCAGATTTTTCCTTTCCCAGCGTGCCATCTCTATCAGAGGAAGATGATGAGCTCACTGAGTCAAAAATTCAAGCTTTTTTGGATGAGAAGGCTCTTGAACTGAAGAAGCTGCAAACACCTTTATATGAAGAGTTCTACAACAGTTTAAATACATCTTGTTCACCAAGTATGATTGATGGTACGAGTGATGATACTGCTTCTCGGAAGTTTTTGAAATTACCTCCTAAGAGTAGGTCTCCAAGTCGGGCACCAAGCACTCCATCTAAAGCAATTGATAATACCGGAAGTCCTGGAAGTAATGGCAGGTCCCCGTCAACTGTTGGCAATGCAAATGATCATAGTTCACAGGACCTTCCATCTTCTCCCCTTAGTGAATTTAAAGTGCTGAAAGTTGATACCGAACAGGAACCCAGTAGCCCAAGTTTAAGCTTTTCTGAGAGGCAGAGAAAGTGGAAAGAAGAGCTCGACCAGGAGCTTGAAAGAAAACGAGAAATGATGCGCCAAGCAGGGGTGGGGTCAAAGACTTCTTCACCAAAGGACAGAGCTTTGCATCGGCAGAGAGAGCGAACACGATTTGCTTCTCCCAGCAAGTAA 1998 0.464 MQDIFGSVRRSLVFRPSPENEDHSLGAGGTLVDKIGYCIRNSRVFSKPSLSPPSLPAIHKDVAAAAAPPPPTIRWRKGELIGCGAFGQVYVGMNLDSGELLAVKQVLIAASSASKEKAQAHVKELEEEVKLLKDLKHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHTNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGEPPWKQQYQQEVAALFHIGTTKSHPPIPDHLSAGAKDFLLKCLQKEPCLRPSASELLQHPFVTGEPMDSLPKPSTAVENFEASSSCAPNAESFLRCSNVNLEASGNNELWGLSNDDDDMCMIDDDEEFSQNDVKHGPLTSENIESFNPMSNPSDDWGCKFDGSPELEHKGVSFGTDENDRSLGHLGTYNKEQADFSFPSVPSLSEEDDELTESKIQAFLDEKALELKKLQTPLYEEFYNSLNTSCSPSMIDGTSDDTASRKFLKLPPKSRSPSRAPSTPSKAIDNTGSPGSNGRSPSTVGNANDHSSQDLPSSPLSEFKVLKVDTEQEPSSPSLSFSERQRKWKEELDQELERKREMMRQAGVGSKTSSPKDRALHRQRERTRFASPSK 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271973g00013 665 Gene3D Transferase(Phosphotransferase) domain 1 74 367 - -
Stsc271973g00013 665 MobiDBLite consensus disorder prediction 520 619 - -
Stsc271973g00013 665 CDD STKc_MAPKKK 74 338 - -
Stsc271973g00013 665 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524
Stsc271973g00013 665 Coils Coil 616 636 - -
Stsc271973g00013 665 SMART serkin_6 75 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271973g00013 665 FunFam Mitogen-activated protein kinase kinase kinase 2 74 367 - -
Stsc271973g00013 665 ProSiteProfiles Protein kinase domain profile. 75 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271973g00013 665 Coils Coil 108 135 - -
Stsc271973g00013 665 MobiDBLite consensus disorder prediction 633 665 - -
Stsc271973g00013 665 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 60 350 - -
Stsc271973g00013 665 SUPERFAMILY Protein kinase-like (PK-like) 74 339 IPR011009 -
Stsc271973g00013 665 MobiDBLite consensus disorder prediction 646 665 - -
Stsc271973g00013 665 Pfam Protein kinase domain 76 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271973g00013 665 MobiDBLite consensus disorder prediction 550 590 - -
Stsc271973g00013 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Stsc271973g00013 665 FunFam Serine/threonine-protein kinase STE11 71 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271973g00013 Stsc-Chr271973 37426 41697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271973g00013 1 665 MAP Kinase Kinase Kinase AT1G54960 57.504 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc271973g00013 Pkinase 1.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271973g00013 K20606 - gmx:100807537 1019.61