Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271972g00017 ATGGCAGAACCCCATTATCAGAGTTTGAAAATCATTGAGCGGTGTTCAATTTCACCTCCACCCGATTCCGTTCCACCAACCTCAATTCCACTAACATTCTTGGACCTCCCATGGTTCCTCCTCCCTCCGCTGCAACGCATCTTCTTCTACAAGCTTCCTCAACGCAACCAAATCTTGGAAAGTGTGGTTCCCAATCTCAAACACTCTCTTTCACTCACTCTTCAACACTTCTTTCCCTTTGCCGGAAACATTGTTGTGCCTCTTCATAAGCACAATAACGTATTACCACACATCCTCTACTCCAATGGTGACTCTGTTTCTTTCACTGTGGCTGAGACCAATCAAGATTTTAAGTCCTTCGTGGATCATGCTCCAACAGATCTTAGAGACATCAACCTTCTTGTTCCGGTATTTCCTTCTCCGCGTACAACGCCAGACGGTGCAAAGTTGCTTCCTGTTTTGGCGGTTCAGATCACTGTACTACCCAACTATGGCTTCAGCATGTGCATCGGCTTTAATCACGTTGTTACTGACGGGAGAGCGTTGCATCATTTCATCAAGTTCTGGGCTTCTGTTTCTAAGTCCAGAGGTGAAGACATGGATTCCATTCAAGTATCTCTTCAACTGCCACTACACAACAGAGACACCATTATCAAAGACTCGAAAGGGTTGAAGTTCGTTTTCTTGGAGGAACTTTCGAGTTCTTTTCCAAATATCGTGGAATCTTTTGGCACACCTGTTAATGTTCCCAGTGACAAGGCTCGCGTCACGTTTTCACTGAGCCGCGAGCATGTTGAGAAAATCAAGAAATGGATAACCCTTGAATGCAACAAAATTGGGTTAAACACAGAGTCGTTGCGCATATCAACTTATGTGGTGACTTGTTCTTTGCTTTGGGTTTGCCTGGTAAAATATTATTACACAAACACTGATGATGTTGGTAACAAGGTTAGTCATGAAACATGCAAGTTTATATTCCCAGCAGATTGTCGAAACTGTCAAGAATTGTCCATTCCATCGACATACTTTGGAAACTGCATTAATCGGCCGGTGGTGGAACTCGAGAAGAGCAAGCTTGTGGGGGAAAATGGGATTGTTGAAGCAGCTATTGCTATTGAAGGCATAATTAGAGAGTTTAAGTGTGACAGTTTTAAAGGGATTGAAAATTTGGTGTCAAATTTGAAGGAATTCAAAAAACCAGAAGGATGTAAAGTAATAGCTACAGGGTCTGCAAAGCATGGAGTTTATGAGAGCGATTTTGGGTGGGGAAAGCCCAAGAAAAGTGATGTAGTTCATGTAATGCCTTCAAGGATATTCACTCTTTGTGATTCTAAGGATGGTAGTGGTGGAGCTGAAATTGGACTCACCCTTGAAAGGAATCAAATCGAATATTTCAATAGTATTATGAAAGAACACATTAGAAGTATTGTAGGTTGTGATTAG 1443 0.422 MAEPHYQSLKIIERCSISPPPDSVPPTSIPLTFLDLPWFLLPPLQRIFFYKLPQRNQILESVVPNLKHSLSLTLQHFFPFAGNIVVPLHKHNNVLPHILYSNGDSVSFTVAETNQDFKSFVDHAPTDLRDINLLVPVFPSPRTTPDGAKLLPVLAVQITVLPNYGFSMCIGFNHVVTDGRALHHFIKFWASVSKSRGEDMDSIQVSLQLPLHNRDTIIKDSKGLKFVFLEELSSSFPNIVESFGTPVNVPSDKARVTFSLSREHVEKIKKWITLECNKIGLNTESLRISTYVVTCSLLWVCLVKYYYTNTDDVGNKVSHETCKFIFPADCRNCQELSIPSTYFGNCINRPVVELEKSKLVGENGIVEAAIAIEGIIREFKCDSFKGIENLVSNLKEFKKPEGCKVIATGSAKHGVYESDFGWGKPKKSDVVHVMPSRIFTLCDSKDGSGGAEIGLTLERNQIEYFNSIMKEHIRSIVGCD 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271972g00017 480 Pfam Transferase family 11 469 - -
Stsc271972g00017 480 Gene3D - 249 476 IPR023213 -
Stsc271972g00017 480 Gene3D - 8 239 IPR023213 -
Stsc271972g00017 480 PANTHER - 9 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271972g00017 Stsc-Chr271972 102796 104758 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271972g00017 25 471 Monolignol Biosynthesis Gene Families AT5G48930 21.814 1.72e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271972g00017 - - gmx:100782335 425.631