Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271972g00009 ATGAGCAACTTTAATGTAAAATCCAACAAATTAGTTTTGGAATTCATTGGAAAATCTCTTCTCTTTTGCACAATCACATATTTGGCCTATGCAGTCCCATCAGGGAATAATGAAACTGATCTCCATGCTTTGTTACACTTCAAGAGCAAGATTGTTCATGATCCATTCAATATCATGAATTTGTGGAATGAATCCACCAACCACTGCACTTGGTATGGGATCACATGCAACTTCTCCAATAATGGAAGGGTCATTTCTTTGATCCTTTCAGACCAACTATTAACTGGAACTGTTCCTCCTTCAATTGGAAACCTCACATTCCTAACCAAACTCAACCTAAGAAACAACAGTTTCCATGGAGAGTTTCCTCAGCAAGTTGGAAATTTACAACATTTGCAACATATTAACATTAGTTACAATGTTTTTGGTGGCAACATTTTTGGTAATCTAAGTCAGTGCAAGGAGTTAAGCATATTATCTGCTGGTCACAACAATTTCACAGGAACAATTCCTTCATGGATTGGAAACTTTTCTTCTACCATGTCTCTGATTAACCTTGCTGTGAACAACTTCCATGGAAGCATACCAAATGAGGTAGGGTATCTATCAAGCTTGACACTTCTTGCACTAAATGGGAATCACTTTTCTGGAATAATTCCTCTCTCAGTTTTCAATATCTCTTCCTTGTACTTTTTCACTGTTTCTCAAAACAATCTGCATGGTACTCTACCATTTGATGTTGGAACTACTCTTCCAAATCTTGAAACTTTTGCTGGTGGAGTCAACAGTTTCACAGGAAGAATCCCTGAATCATTGACCAATGCATCAAGGCTTCAAATTCTAGACTTCGCAGAAAATGGTCTCATTGAAACACTACCTAGAAAATTTTCACGATTACCCCTTTTGGGAAGACTCAATTTTGAGGATAATAAACTTGGAAGTGGTAAAGTTGGAGATCTGGATTTTCTTGATTCATTGGTTAATTGTACTTCTCTTCAAGTTTTAGGCCTTGCTGGAAACAATTTTGGAGGTTATCTTCCCAGTTCAGTTTCTAATCTTTCTACACAATTGAACACACTTACAGTAGGAGCTAATAAGCTACATGGAAGTGTTCCAATTGGGATTGGGAACCTTGTTAATCTAACACTGCTGGAATTGGAAGAGAATAGCTTTAGTGGTCATGTTCCTTATACAATTGGTATACTTCAAAATCTGGAAACTTTGGCATTGAGGGTAAACAATTTTTCAGGACCAATCCCTTTCTCTCTTGGAAACTTAACAAGATCAACAGGGTTACTCATGGAGGAGAACGATTTCGAGGGAAATATACCTTCGAGTCTTGGAAATTGCAAGAAATTGTTGATGCTAACTCTTCATTATAACAAGCTCAATGGTACCATACCAAGAGAAGTACTTGCCTTGGATTCTCTCTCAATTTCCTTGGATTTGTCTCATAATCTTTTGGAAGGTTTTGTGCCTATGGAAGTGGGTAATTTGGTCAATCTTGGAAAGTTGGATCTCTCATATAACAGATTTTCCGGCACGATTCCGGCCACTCTTGGAAGCTGTCTTAGTTTGGAGTTCCTGCATTTGCAGGGTAACTCTTTTGAGGGAAATATCCCTTCAACTTTTCAGGATTTGAGAGGCTTAGAAGACTTAGATCTTTCATTCAATAACTTGTCTGGCAAGATTCCTCAATTTCTCGGCATGTTTCAAGAGTTGCATCACCTCAATCTTTCTTGCAATGATTTTGAAGGCGAAGTACCAAAGAATGGAATCTTCAAGAATGTAACATCCTTTTCAGTGGACAAAAATAGCAAGCTCTGTGGCGGCGTCTCGGAGTTAAATTTATCAGCATGTGCTGTCAAGGAACACTCTTCATCTGGAAAATTTCTTGCTCCAAAGATTGTTGCACCTAGTAAGAAAACTTCAGCAACAACTACTACAAAGGATCTGGAATTGCAAATTTCTTACTTGGAAATTGCAAGGAGCACCAGAGGATTTTCCGAAGAAAACTTGATTGGCACAGGAAGTTTTGGCTCTGTATACAAAGGAGTTCTTTCGGGCGATGGAACAATCGTAGCGGTCAAGGTATTAAATCTTGAACAAAGAGGAGCTTCTAGAAGCTTTATCGACGAATGCCAGGTTCTTCGAGCTACAAGGCACAGAAACCTTCTCAAGATTGTAACTGCAATCTCAAGTGTTGATCATCAAGGTAATGACTTCAAAGCTTTGGTATTTGAGTTCATGCCAAATGGAAATCTAGATGATTGGCTTCATCCTAGAATAAATAGTGTGGAATATGATCAAACCAAGAGATTGAGCTTTATCCAAAGATTGAACATAGCAATTGATGTTGCTTGTGCATTGGAATATCTGCACCACTCCTCTGAACTCCAATTGTCCATTGTGATATAA 2418 0.383 MSNFNVKSNKLVLEFIGKSLLFCTITYLAYAVPSGNNETDLHALLHFKSKIVHDPFNIMNLWNESTNHCTWYGITCNFSNNGRVISLILSDQLLTGTVPPSIGNLTFLTKLNLRNNSFHGEFPQQVGNLQHLQHINISYNVFGGNIFGNLSQCKELSILSAGHNNFTGTIPSWIGNFSSTMSLINLAVNNFHGSIPNEVGYLSSLTLLALNGNHFSGIIPLSVFNISSLYFFTVSQNNLHGTLPFDVGTTLPNLETFAGGVNSFTGRIPESLTNASRLQILDFAENGLIETLPRKFSRLPLLGRLNFEDNKLGSGKVGDLDFLDSLVNCTSLQVLGLAGNNFGGYLPSSVSNLSTQLNTLTVGANKLHGSVPIGIGNLVNLTLLELEENSFSGHVPYTIGILQNLETLALRVNNFSGPIPFSLGNLTRSTGLLMEENDFEGNIPSSLGNCKKLLMLTLHYNKLNGTIPREVLALDSLSISLDLSHNLLEGFVPMEVGNLVNLGKLDLSYNRFSGTIPATLGSCLSLEFLHLQGNSFEGNIPSTFQDLRGLEDLDLSFNNLSGKIPQFLGMFQELHHLNLSCNDFEGEVPKNGIFKNVTSFSVDKNSKLCGGVSELNLSACAVKEHSSSGKFLAPKIVAPSKKTSATTTTKDLELQISYLEIARSTRGFSEENLIGTGSFGSVYKGVLSGDGTIVAVKVLNLEQRGASRSFIDECQVLRATRHRNLLKIVTAISSVDHQGNDFKALVFEFMPNGNLDDWLHPRINSVEYDQTKRLSFIQRLNIAIDVACALEYLHHSSELQLSIVI 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271972g00009 805 Gene3D Transferase(Phosphotransferase) domain 1 750 803 - -
Stsc271972g00009 805 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Stsc271972g00009 805 FunFam LRR receptor-like serine/threonine-protein kinase EFR 323 626 - -
Stsc271972g00009 805 Gene3D Phosphorylase Kinase; domain 1 632 749 - -
Stsc271972g00009 805 ProSitePatterns Protein kinases ATP-binding region signature. 674 697 IPR017441 GO:0005524
Stsc271972g00009 805 Gene3D Ribonuclease Inhibitor 151 248 IPR032675 -
Stsc271972g00009 805 SUPERFAMILY L domain-like 37 312 - -
Stsc271972g00009 805 SUPERFAMILY RNI-like 87 590 - -
Stsc271972g00009 805 Gene3D Ribonuclease Inhibitor 249 320 IPR032675 -
Stsc271972g00009 805 Gene3D Ribonuclease Inhibitor 321 621 IPR032675 -
Stsc271972g00009 805 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 77 322 - -
Stsc271972g00009 805 FunFam LRR receptor-like serine/threonine-protein kinase EFR 639 749 - -
Stsc271972g00009 805 PANTHER OS04G0122200 PROTEIN 212 796 - -
Stsc271972g00009 805 Pfam Protein tyrosine and serine/threonine kinase 671 796 IPR001245 GO:0004672|GO:0006468
Stsc271972g00009 805 SUPERFAMILY Protein kinase-like (PK-like) 646 795 IPR011009 -
Stsc271972g00009 805 ProSiteProfiles Protein kinase domain profile. 668 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271972g00009 805 Gene3D Ribonuclease Inhibitor 39 150 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271972g00009 Stsc-Chr271972 52603 55079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271972g00009 37 794 Receptor kinase-like Gene Family AT3G47570 42.293 0.0 586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc271972g00009 PK_Tyr_Ser-Thr 4.9e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271972g00009 - - gmx:100785230 1060.44