LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc271972g00008	ATGGTTGCACATGTTGGTGATTTCGGATTAGCTACATTTATGTTTGAAGATTCAAGCAATGTTTCTAAACATTCAATTATGTCAGCTTGCTTGAAGGGTTCTATTGGATACATCCCTCCAGAGTATGGAATGGGTGGCCAACCTTCTACACAAGGAGATATTTACAGCTATGGGATACTATTGCTAGAGATTTTCACAGGAAAAAGACCAACATATGAAATTTTCATAGGTGGCATGGGAATTAACCAGTTTACAGGCACAGCTATACCAAATCATGTAATGCATATAACTGATCCTTTATTGATCTCTGAAGAAGAGTATGATCAAGGAGATGAAGAAGATTTTACTGAGGAAGATGCAGTAAGAAGGGAGCATGAAGCTGAGATTCTTGCTACAATGTTGGATTGCTTGGTTTTATTGTTGCAAATTGGAGTGTCGTGCTCAGCAAATTCACCTTGTGAAAGGTTGCCTATGAATGTTGTCGTTAACAAACTTCATGCAATCAAGAATATATATCTTAGGACTCAATAA	531	0.3729	MVAHVGDFGLATFMFEDSSNVSKHSIMSACLKGSIGYIPPEYGMGGQPSTQGDIYSYGILLLEIFTGKRPTYEIFIGGMGINQFTGTAIPNHVMHITDPLLISEEEYDQGDEEDFTEEDAVRREHEAEILATMLDCLVLLLQIGVSCSANSPCERLPMNVVVNKLHAIKNIYLRTQ	176

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc271972g00008	176	SUPERFAMILY	Protein kinase-like (PK-like)	2	165	IPR011009	-
	Stsc271972g00008	176	Pfam	Protein tyrosine and serine/threonine kinase	2	159	IPR001245	GO:0004672\|GO:0006468
	Stsc271972g00008	176	PANTHER	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	1	170	-	-
	Stsc271972g00008	176	ProSiteProfiles	Protein kinase domain profile.	1	173	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc271972g00008	176	Gene3D	Transferase(Phosphotransferase) domain 1	1	174	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc271972g00008	Stsc-Chr271972	51631	52599	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc271972g00008	1	176	Receptor kinase-like Gene Family	AT3G47110	37.500	1.43e-35	129

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Stsc271972g00008		PK_Tyr_Ser-Thr	1.6e-09	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc271972g00008	-		-	gmx:100785230	224.942