Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271971g00004 ATGTCTAACTTTATAGTGAGAGTTCATAGGAGTGGATTGAAGGTTACATCTCACAAATACAAGTTGGGTGTATTCCTGAAGACTAATGTTAGCATCCTTTCTGATGATGTCTTCCCATTCTGTCCTTTCCGTTTCACTCCTTTTCGTGAAATTGATGAGATGTGTACTAGCAACAACATTTTCCTCATAGTTGTTGGGAAAGAGGCTCCTGAAGATATTATTACAAAGGCTGGTCAGTCCAGCAAAAGGCTGAGGCTTTACTTGGAGGATGCAGAGAAAAATAAGATGAAGTGTACACTTTTTGGTGACTTCGTTGGTGAAGCTTTGAGTCATCTGGAGAGAACAGACGTTCAACCATTGGTTTCGGTTGGCCAGTTATTTAAGCCCCACGTTTGGTTGGAAGATGTGAATGTGCAAACAAGTTTTTATGGTTCTCGTGTTTTCTTCAACCCCACTTTTCCAGATGCAATTGAATTTAGGAATAGCCATGTGGAAAGTCAGGGTCAACGTTCTTTGACTCAAGAGCTGAGTAGCGCTGAATTTCGAGTGCTAAGTATTGAAGAAGTGTATAATCTGACTGAGGAAACTGAGTGTTGGATTTTGTCCACTGTTGTTTCTGTTGAAGGAGGGAAGAATGATTGGTTTTATGCCTCCTGCAAAGGATGCTTCAAAAAAGTTATTCCAGTCGATGATAACTACCACTGCACTAATGTTAAATGTGGTCAACGTGGCTCCAATCCTCCTTTGAAATTTCGTTTGAAGGTTATTGTTGCTGACGGTACTGGATGTCTTGCTGTGCTGTTGTGGAATACTGAGTGTGCTTCAATCCTAGGAATGTCTCCGAATGATGTGAGGGATATTAGTAAAAATGAGAAGGGAAATGGCTATCCCAAAATCTTCAATCAAATTGTTGAGAACAAATACCTTGTGAGCCCCCCACACCAACTTCCGGTCGCGATAACTTTTGATCCAGAGCTTCGATTGACGCACGATTTGCGGCTACGCGAAGCTCTTGTCGTCCTCTTCACAATCATCACACATGTGATCATTTCACGTGCTAACGAGCATGGTAGTCGAAGCTAA 1083 0.4183 MSNFIVRVHRSGLKVTSHKYKLGVFLKTNVSILSDDVFPFCPFRFTPFREIDEMCTSNNIFLIVVGKEAPEDIITKAGQSSKRLRLYLEDAEKNKMKCTLFGDFVGEALSHLERTDVQPLVSVGQLFKPHVWLEDVNVQTSFYGSRVFFNPTFPDAIEFRNSHVESQGQRSLTQELSSAEFRVLSIEEVYNLTEETECWILSTVVSVEGGKNDWFYASCKGCFKKVIPVDDNYHCTNVKCGQRGSNPPLKFRLKVIVADGTGCLAVLLWNTECASILGMSPNDVRDISKNEKGNGYPKIFNQIVENKYLVSPPHQLPVAITFDPELRLTHDLRLREALVVLFTIITHVIISRANEHGSRS 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271971g00004 360 Gene3D - 166 311 IPR012340 -
Stsc271971g00004 360 SUPERFAMILY Nucleic acid-binding proteins 43 162 IPR012340 -
Stsc271971g00004 360 CDD RPA1_DBD_C 203 309 IPR047192 -
Stsc271971g00004 360 Pfam Replication factor-A C terminal domain 211 309 IPR013955 -
Stsc271971g00004 360 Gene3D - 41 165 IPR012340 -
Stsc271971g00004 360 SUPERFAMILY Nucleic acid-binding proteins 185 310 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271971g00004 Stsc-Chr271971 13361 15602 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271971g00004 6 293 Core DNA Replication Machinery Family AT5G08020 22.222 6.25e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271971g00004 - - ahf:112718168 294.664