Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271970g00023 ATGGAGAGTGGTGGTTCTTCCTCACATCATGGCCACCCTCAAAACTCAAGCACATACTCAAGCATTGGAGGAAGGAACCAGCAAGAAGAAAACCTGAAAACATTGCCCATGTCAAGTGTGCATAGGATCATGAGACAAATTGTTCCAAAGCATGCAAAGATTTGTGATGACACCAAAGAAATTGTTCGGAGCTGCATTTGCGAGTTCATAGGTAAAATTACCGATGACGCAATTGAGCATTGTGACACCGAGCAACGTAGGGTTCTTACTGCTGAGGATATCATACGGGCGATGTCAAGGCTTGGTTTCAACAACTACGCTGAGCTTCTCGAGGCTCACCTTCGCCACGTGCGCCATACTAGGGCTAAGGTGCGCTACACTGATGTTCCTCAGGGCCCAGGTGGAACAACGCCTACCCCTACACGTGGGGGTGTTGGTGGTTTGGATCCACCAACATCTTTCACGCGTGGGGAGATAGGAAAGATTTCTGGTGAATTCGGGTTGGGTAGTGGGGCTTGTTCGACCAGTGATGGCAACGTCGGAGGGATTGGGTTTGATCCTCTAGCTTACCTCAATCGTGACAAGTTCCTTTGA 594 0.4916 MESGGSSSHHGHPQNSSTYSSIGGRNQQEENLKTLPMSSVHRIMRQIVPKHAKICDDTKEIVRSCICEFIGKITDDAIEHCDTEQRRVLTAEDIIRAMSRLGFNNYAELLEAHLRHVRHTRAKVRYTDVPQGPGGTTPTPTRGGVGGLDPPTSFTRGEIGKISGEFGLGSGACSTSDGNVGGIGFDPLAYLNRDKFL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271970g00023 197 MobiDBLite consensus disorder prediction 127 154 - -
Stsc271970g00023 197 Gene3D Histone, subunit A 23 131 IPR009072 GO:0046982
Stsc271970g00023 197 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 12 123 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc271970g00023 197 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 34 98 IPR003958 -
Stsc271970g00023 197 SUPERFAMILY Histone-fold 34 123 IPR009072 GO:0046982
Stsc271970g00023 197 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271970g00023 Stsc-Chr271970 93508 94614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271970g00023 30 118 CCAAT-HAP3 Transcription Factor Family AT5G47670 48.315 6.48e-26 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc271970g00023 CBFD_NFYB_HMF 2.9e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271970g00023 K08065 - msin:131256476 102.449