Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271969g00018 ATGATACTTATCCAAGTCTTTGTCCTCTTCTTAACTTCTTTTTCGCCGGCGGAGGCCAAAGACACACTCTCACAAGGCTCCTCTCTTTCCGTCGAGAAGCCAACCACCGACACCCTCGTCTCCGCCAATGGCGACTTCTCCGCCGGATTCTTCCAAGTCGGCGACAACGCTTTCTGCTTCTCCGTAATGTTCACAAGGTCCCAACCACCCACCCCAGTTTGGATGGCCAACCGCGACCAGCCCGTCAACGGAAAAGCCTCAACTCTATCCCTCTTAAAATCCGGCAACCTTATTCTCATCGACGCCGGAAGAACCACCTTCTGGTCCACCACCACATTCTCCTCTTCCAAAGTCCACCTCAAGCTCAACAACAACGGCAACCTCCTCCTCCAAACTTCTCAAGGAAGCATCCTCTGGCAAAGCTTCGATTCACCAACTGACACCCTTCTTCCCGGTCAAAAACTCACCGATCAAGCTTTCCTTCTCTCTTCAAGAAGCAAAACAAACTACTCCTCCGGCTTCTACAAGCTCTTCTTCGACACCGATAACGTTCTCAAGTTGCTCTACAAAGGCCCTAACATCTCCAGCGTGTACTGGCCAACCCCCTATAACACACCAAGCACTAACGGAAGATCCACCTTCAACATTTCAAGAATCGCAATCTTGGATTCTTACGGAAGCTTCTTATCCTCCGACGGCTTCCAGTTCAGCTCCACGGATTACCTCGCAAAGCTCCATAGAAGGCTTGTCATGGATCCCGATGGAAACACACGTTTATACAGCTTCAACGAGAAGAGTAACATTTGGGAAGTAACTTGGCTTGCCATTGCCGCATCTTGTAGTGTCCATGGCCTCTGCGGAGCAAATAGCTTGTGCGCTTATCATCCTGTTAATGGCAGAACTTGCTATTGCATGCAAGGATTCAAGGTTAAGGATCCCAATGACTGGACTCAAGGTTGCGTGCCTGAGTTTGATGAAGAAGAACTCACTTGCAGTAATCGCAAAAAAAACGTGTCCGTTGATTATCTCACACTTCCAACGACGGAGTTTTATGGCTATGAGAGCAGAGTTTATAATGTTGCAAGTTTGATAGAATGCCAGAATATATGCACGCAGCTTTGCGAAGATTGCAAAGGCTATCAACTCAGTTTCAATACCATAAGAACATATAATTGTTACCCTAAAACTGTTTTGCTTAACGGAAGAGATTCTGGTCCTGTCAATGGCGACACGTATTTGAAATTGCCGAAAGAAACTTTGTTATCTTCCGAGAAGCCTCTCAAGCATTCACCGATGAAATGTGATTCTAATTTCGCTCAACCTTTGAATAGATTCTACCAGAAACCAAGAAGAAACTCAACTTTGTATTTCTTGCTATGGTTCGCCACCGCGGTAGGGGTGCTTGAATTCACAATAATCTTGGTGGTGTGGTTCTTCTTGTTCAGAACCAATAAGGAATTACCTGATCATGAAGATCAACGGTTACTCCTTTCCGCTACGGGATTCCAGAGATTCAGCTACGCAGAGCTGAAAAGAGCGACGAAAGGATTCAGCAAAAGCCAAGAGATTGGTCGAGGCTCCGGCGGGGTTGTATACAAAGGGAAGCTAGACGATGATCGTGTTGCTGCCATAAAATGCCTCAGCAGTGATGCAAATCAAGGAGAAGCTGAATTCCTAGCGGAGTTAAGCACCATTGGGATGTTGAACCACATGAATTTGATTGACATGTGGGGTTACTGTGTTGAAGGGAAGCACAAGATATTGGTTTATGAGTTCATGGAGCATGGCTCCTTGGCAGATTATGTGTCTTCGAACACGCTTGATTGGAAGAAAAGATTTGATGTTGCAGTAGGAACAGCGAAAGGGCTTGCTTATTTGCACGAAGAGTGTTTGGAATGGGTGTTGCACTGCGACGTGAAGCCGCAGAATATTCTTCTAGATTCAAACTTCAAGCCCAAGGTTGCGGATTTCGGGCTGTCAAAGCTTCTGAATAGAGACGAGCGTGGGAGTTCATCAGGATTTTCAAGAATAAGAGGGACCCGTGGGTATATGGCTCCAGAGTGGGTGTACAATCTTCCAATAACATCGAAGGTGGATGTTTATAGCTATGGGATTGTGGTGCTGGAAATGGTGAGTGGGAAGAGCGCTATGGAGACGCATAGTCTTGATTTGAGTAGTCGGGGAATTGAGCAGCGGCGGTTGGTGACGTGGGTGAGAGACGTTGTAGAGGGTGCTCCTAATAGAGAGTCTTGGGTCGAGGCTGTTGTGGATACTAAATTGGAAGGGGAATATGAGATTTCACAGGTTGAGGCTTTGGTCAAAGTGGCTTTGCAGTGTGTCCATGATGACATGAATCAAAGACCCTCCATGAGCCAAGTAGCGGAGATGCTTCAGCCCCATGGAAAAACTATCCCACTTTCTTTTCTTAATTAG 2433 0.4653 MILIQVFVLFLTSFSPAEAKDTLSQGSSLSVEKPTTDTLVSANGDFSAGFFQVGDNAFCFSVMFTRSQPPTPVWMANRDQPVNGKASTLSLLKSGNLILIDAGRTTFWSTTTFSSSKVHLKLNNNGNLLLQTSQGSILWQSFDSPTDTLLPGQKLTDQAFLLSSRSKTNYSSGFYKLFFDTDNVLKLLYKGPNISSVYWPTPYNTPSTNGRSTFNISRIAILDSYGSFLSSDGFQFSSTDYLAKLHRRLVMDPDGNTRLYSFNEKSNIWEVTWLAIAASCSVHGLCGANSLCAYHPVNGRTCYCMQGFKVKDPNDWTQGCVPEFDEEELTCSNRKKNVSVDYLTLPTTEFYGYESRVYNVASLIECQNICTQLCEDCKGYQLSFNTIRTYNCYPKTVLLNGRDSGPVNGDTYLKLPKETLLSSEKPLKHSPMKCDSNFAQPLNRFYQKPRRNSTLYFLLWFATAVGVLEFTIILVVWFFLFRTNKELPDHEDQRLLLSATGFQRFSYAELKRATKGFSKSQEIGRGSGGVVYKGKLDDDRVAAIKCLSSDANQGEAEFLAELSTIGMLNHMNLIDMWGYCVEGKHKILVYEFMEHGSLADYVSSNTLDWKKRFDVAVGTAKGLAYLHEECLEWVLHCDVKPQNILLDSNFKPKVADFGLSKLLNRDERGSSSGFSRIRGTRGYMAPEWVYNLPITSKVDVYSYGIVVLEMVSGKSAMETHSLDLSSRGIEQRRLVTWVRDVVEGAPNRESWVEAVVDTKLEGEYEISQVEALVKVALQCVHDDMNQRPSMSQVAEMLQPHGKTIPLSFLN 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271969g00018 810 ProSiteProfiles Protein kinase domain profile. 517 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271969g00018 810 Gene3D - 16 143 IPR036426 -
Stsc271969g00018 810 SUPERFAMILY alpha-D-mannose-specific plant lectins 58 202 IPR036426 -
Stsc271969g00018 810 ProSiteProfiles PAN/Apple domain profile. 331 416 IPR003609 -
Stsc271969g00018 810 CDD STKc_IRAK 523 799 - -
Stsc271969g00018 810 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Stsc271969g00018 810 Pfam Protein kinase domain 517 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271969g00018 810 Pfam S-locus glycoprotein domain 242 311 IPR000858 GO:0048544
Stsc271969g00018 810 SMART serkin_6 517 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271969g00018 810 PIRSF SRK 1 807 IPR024171 GO:0004674
Stsc271969g00018 810 Gene3D Transferase(Phosphotransferase) domain 1 593 804 - -
Stsc271969g00018 810 ProSitePatterns Protein kinases ATP-binding region signature. 523 545 IPR017441 GO:0005524
Stsc271969g00018 810 Gene3D - 146 273 IPR036426 -
Stsc271969g00018 810 ProSiteProfiles Bulb-type lectin domain profile. 14 143 IPR001480 -
Stsc271969g00018 810 SMART blect_4 30 145 IPR001480 -
Stsc271969g00018 810 FunFam Serine/threonine-protein kinase 593 803 - -
Stsc271969g00018 810 FunFam S-receptor-like serine/threonine-protein kinase 484 592 - -
Stsc271969g00018 810 Gene3D Phosphorylase Kinase; domain 1 481 592 - -
Stsc271969g00018 810 SUPERFAMILY Protein kinase-like (PK-like) 495 797 IPR011009 -
Stsc271969g00018 810 Pfam D-mannose binding lectin 71 157 IPR001480 -
Stsc271969g00018 810 PANTHER OS07G0415500 PROTEIN 4 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271969g00018 Stsc-Chr271969 79883 82480 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271969g00018 465 797 Receptor kinase-like Gene Family AT1G56120 39.053 2.78e-62 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc271969g00018 Pkinase 1.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271969g00018 - - aip:107606391 1418.68