Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271969g00017 ATGTCAGTGGATAAACCAAACGATGTTATAGTATCACCCAAGGGAACCTTCTCTGCTGGCTTCTACGCTGTTGGCAAAAACGCTTACTGCTTTGGCATTTGGTTTTCCAAGAATCCTACTCTTGTATGGATGGCAAATCGTGACTATCCAGTCAACGGAAAACACTCAAAGCTTTCCTTACTCTCAAATGGTAACCTTGTTCTACTGGATGCCGACAACTCCCACGTTTGGTCAACAGACACATTTTCACCGCCGTCTTCCGCCGTGCATTTGGTTCTGTATGACACCGGAAACCTTGTTTTAATGGAGGACGGTGACAGAGACAACAGAAGCAGCTCCGTGTTGTGGCAAAGCTTTGATTTCCCAACGGATACGCTTCTTCCTGAGCAAGTGTTCACCCGATTCACCAAACTAATCTCGTCGAAAAGCGAGACAAACAAGTCCACCGGTTTGTACACGTTGTTCTTCGACAACGATAACGTTCTTCGTCTTCTTTACGATGGCCCTGAAGCTTCAGGGCTGTACTGGCCAGATCCATTAAAACTTGATTGGAACAATCACAGGAGTAGTTACAACAACAGCAGGGTTGCAGTGTTGGACACTTTGGGGATTTTCATTTCCTCTGATAATTTCACTTTCATGACTTCCGATTTCGGCTCCGCCGCCATCCAGCGAAGGATAACCCTTGATCCCAACGGAAACCTTGTTGTTTATAGCCGTATCAATGATCATGATCACTGGTATGTTTCGTGGCAAGCATTTTCAAGACCATGCCAGATCCATGGCGTTTGTGGGCCCAATAGTTTGTGCACTTTCCATACTAACTCTACCACCCGATGCTCTTGCCTTCCCGGCCATAAGATGAAGCAACCAAATGATTGGTCTTATGGCTGTGAACCCAGATTCTCTCAGTCTTGCCAGAACAACGAAAGCGCGTCACGGTTCATATCTTTAAGTAACACGGAGTTTTATGGGTATGATTATGGACTCATGATAAATTACACATTAGATCAGTGTAAGGATTTATGCCTCCAACTATGTGATTGCAGAGGTTTTCAGTATACTTATAACAAAGCCTCTGGTACCAACAAATGTTATATCAAGCTTCAATTAAGGAATGGAGATCGCGTAACATATTGCAATGCTGAATTTTATGTGAAGCTTCCAGCCAATAGTACATATTCTTTTCATGATGATCAAGTTTCAATCGTTAGTAAAAACAACAATCTTGATTGTCCTGTTGGGGAAGAAACAGTACAACTTGAAAGGAGTTATATCAAATGGCATGTAAGCAGGTATGTTAAGTTCTTGTTGTGGTTTGCAGGAGGAGTTGGGATATTTGAGATGCTGTGCATATTTGTGGTTTGGTACTTCATGGTAAGGTTTAGGATGCATTATTCTGGTGCAGATGAAGGGGTCTATGATTTGGTAGGGTTCAGGAGATTCAGTTACTCTGAGCTGAAACAAGCCACAAAAGGGTTTAGCCAAGAGATTGGAAAGGGTGCATGGGGGAGTGTATACAAAGGTGTACTCTCCGACGGGCGAGTGGCGGCGGTGAAGAGACTAATGGAAGCAAATCAAGGAGAAGAGGAGTTTCTTGCTGAAGTGAGCAGCATTGGAAGGCTCAATCACATGAACTTGATTAAGATGTGGGGATACTGTGCTGAAAGGAAACACAGGCTCCTTGTTTATGAGCACATGGAGCATGGTTCTCTTGCTGAGAATCTTAGGACAAATAGATTGGATTGGTCACAAAGGTTTGAGATTGCGTTGGGTACAGCCAAAGGTTTGTGTTATCTTCATGATGAGTGTTTGGATTGGATTTTGCATTGTGATGTAAAGCCACAGAATATTCTTCTGGATTCCAATTTTCAACCCAAGGTAGCTGATTTTGGATTGTCAAAGCTGCTAAATAGAAGTGACACTAATGATAAGTACTCTAGCTTTTCCAAGATAAGAGGAACCAGAGGATACATGGCTCCTGAGTGGGTTTTGAACCTCCCAATAACAACCAAGGTTGATGTTTATAGCTATGGAATTGTTGTGTTGGAAATGTTCACTGGAAAGAGCCCAACCAAGAACGTTTGGACTAGTAGTGATGGAGTAGAGAATAATAATCAACATATGTACCTGGTTGCATGGCTGAGAGAGAAACAGAATAAGGGATTTGGTAGTGGTTGGGTTAGTGAAATATTAGACCCCAGCATAGAAGGTGATTATGATGAAAATAAGTTGGAAGCTTTGGCTACAGTTGCTTTGCAATGTGTACAGGATGAGAGGGACAAAAGACCCACAATGAGCCAAGTGGTAGAAATGCTTCAGAAATATTTGTAA 2334 0.4259 MSVDKPNDVIVSPKGTFSAGFYAVGKNAYCFGIWFSKNPTLVWMANRDYPVNGKHSKLSLLSNGNLVLLDADNSHVWSTDTFSPPSSAVHLVLYDTGNLVLMEDGDRDNRSSSVLWQSFDFPTDTLLPEQVFTRFTKLISSKSETNKSTGLYTLFFDNDNVLRLLYDGPEASGLYWPDPLKLDWNNHRSSYNNSRVAVLDTLGIFISSDNFTFMTSDFGSAAIQRRITLDPNGNLVVYSRINDHDHWYVSWQAFSRPCQIHGVCGPNSLCTFHTNSTTRCSCLPGHKMKQPNDWSYGCEPRFSQSCQNNESASRFISLSNTEFYGYDYGLMINYTLDQCKDLCLQLCDCRGFQYTYNKASGTNKCYIKLQLRNGDRVTYCNAEFYVKLPANSTYSFHDDQVSIVSKNNNLDCPVGEETVQLERSYIKWHVSRYVKFLLWFAGGVGIFEMLCIFVVWYFMVRFRMHYSGADEGVYDLVGFRRFSYSELKQATKGFSQEIGKGAWGSVYKGVLSDGRVAAVKRLMEANQGEEEFLAEVSSIGRLNHMNLIKMWGYCAERKHRLLVYEHMEHGSLAENLRTNRLDWSQRFEIALGTAKGLCYLHDECLDWILHCDVKPQNILLDSNFQPKVADFGLSKLLNRSDTNDKYSSFSKIRGTRGYMAPEWVLNLPITTKVDVYSYGIVVLEMFTGKSPTKNVWTSSDGVENNNQHMYLVAWLREKQNKGFGSGWVSEILDPSIEGDYDENKLEALATVALQCVQDERDKRPTMSQVVEMLQKYL 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271969g00017 777 PIRSF SRK 1 777 IPR024171 GO:0004674
Stsc271969g00017 777 Pfam Protein kinase domain 495 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271969g00017 777 ProSiteProfiles Protein kinase domain profile. 492 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271969g00017 777 SMART blect_4 1 122 IPR001480 -
Stsc271969g00017 777 CDD B_lectin 1 122 IPR001480 -
Stsc271969g00017 777 Pfam D-mannose binding lectin 40 133 IPR001480 -
Stsc271969g00017 777 ProSiteProfiles Bulb-type lectin domain profile. 1 114 IPR001480 -
Stsc271969g00017 777 ProSitePatterns Protein kinases ATP-binding region signature. 498 520 IPR017441 GO:0005524
Stsc271969g00017 777 SUPERFAMILY Protein kinase-like (PK-like) 476 773 IPR011009 -
Stsc271969g00017 777 FunFam Putative receptor-like protein kinase 567 777 - -
Stsc271969g00017 777 ProSiteProfiles PAN/Apple domain profile. 306 389 IPR003609 -
Stsc271969g00017 777 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Stsc271969g00017 777 FunFam S-receptor-like serine/threonine-protein kinase 464 566 - -
Stsc271969g00017 777 SMART serkin_6 492 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271969g00017 777 Gene3D Transferase(Phosphotransferase) domain 1 567 777 - -
Stsc271969g00017 777 SUPERFAMILY alpha-D-mannose-specific plant lectins 31 177 IPR036426 -
Stsc271969g00017 777 Pfam S-locus glycoprotein domain 214 289 IPR000858 GO:0048544
Stsc271969g00017 777 CDD STKc_IRAK 498 775 - -
Stsc271969g00017 777 CDD PAN_AP_plant 302 389 - -
Stsc271969g00017 777 Gene3D Phosphorylase Kinase; domain 1 470 566 - -
Stsc271969g00017 777 Gene3D - 3 120 IPR036426 -
Stsc271969g00017 777 PANTHER OS07G0415500 PROTEIN 10 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271969g00017 Stsc-Chr271969 75112 77607 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271969g00017 461 773 Receptor kinase-like Gene Family AT3G58690 41.590 9.95e-68 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc271969g00017 Pkinase 5.1e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271969g00017 - - gmx:100819308 1001.12