Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271969g00011 ATGGAGACTCGCGCCGCCGCAAAGAGAAGAGCCACCGCCCCCACCCAACTTGAGATTCAACACCTCAAGAAGCAGCGTGTTGTCTTGGCTGAACTCCCCAATACCCCCAACCTCATTCAATCCCCCACCATCAACGAGAAGAAACCCCATTCCAGAATTGATACAAAATCGCTCAAATTCCAGGATCCCAATCTTGTCGACGAGCCTTATGTTTCTGACATCCATAGCTATCTTCATTCAATGGAGATGGAGAAGAAGAGAAGGCCAATGGTAGATTACATTCAAAAAGTTCAGAAAGATGTTACCGCTAACATGAGAGGTGTATTGGTGGATTGGTTAGTAGAGGTTGCAGGAGAGTATAAGCTTCTCCCTGAGACTCTTTTTCTCGCCGTTTCTTACATTGATAGATTCCTCTCTACAAACCCTGTTGTTCGATCCAAGTTTCAGTTGCTCGGTGTTTCTTCCATGCTCATTGCATCGAAGTATGAAGAAATTAACCCTCCGGATGTGAAGGAATTCTGCTACATCACTGATGATACATACACGAAATCACAGGTTGTACAGATGGAAGCTGACATACTCAAATCCCTAAAGTTTGAAATGGGGAACCCTACTGTTAAGACCTTCCTATCTATGTATTCAGGGATGGCTTCTCAAGATAAAAAAATTAAAAATTCTCAGATTGAATTTTTGAGCTGCTATCTTGCTGAGCTAAGTCTATTGGACTATGGCTGTCTGAAATTCTTGCCTTCTATGATAGCTGCTTCGGTTATATTTCTTGCCAGATTTATTATCTGGCCTGTGGTGCATCCTTGGACTTCATCCTTGCGTGAATGCTCGGGTTATACATCGCTTGAACTTAAAGAATGTGTTCTGATCTTACATGACTTGTATCTGTCGAGAAGGGCAGCGTCTTTATCAGCTGTTCGGGAGAAATACAAGCAGCACAAGTTCAAATGTGTGGCAAATCTGTCTTCCTCACCAAGTATACCAAGTTCTTACTTTAAAGAAGAGTGA 1017 0.4267 METRAAAKRRATAPTQLEIQHLKKQRVVLAELPNTPNLIQSPTINEKKPHSRIDTKSLKFQDPNLVDEPYVSDIHSYLHSMEMEKKRRPMVDYIQKVQKDVTANMRGVLVDWLVEVAGEYKLLPETLFLAVSYIDRFLSTNPVVRSKFQLLGVSSMLIASKYEEINPPDVKEFCYITDDTYTKSQVVQMEADILKSLKFEMGNPTVKTFLSMYSGMASQDKKIKNSQIEFLSCYLAELSLLDYGCLKFLPSMIAASVIFLARFIIWPVVHPWTSSLRECSGYTSLELKECVLILHDLYLSRRAASLSAVREKYKQHKFKCVANLSSSPSIPSSYFKEE 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271969g00011 338 ProSitePatterns Cyclins signature. 106 137 IPR006671 -
Stsc271969g00011 338 SUPERFAMILY Cyclin-like 180 331 IPR036915 -
Stsc271969g00011 338 SMART cyclin_7 111 195 IPR013763 -
Stsc271969g00011 338 SMART cyclin_7 208 296 IPR013763 -
Stsc271969g00011 338 CDD CYCLIN_AtCycA-like_rpt2 204 318 - -
Stsc271969g00011 338 Gene3D - 73 323 - -
Stsc271969g00011 338 FunFam Mitotic cyclin 6 89 189 - -
Stsc271969g00011 338 Gene3D - 87 202 - -
Stsc271969g00011 338 Pfam Cyclin, N-terminal domain 73 201 IPR006671 -
Stsc271969g00011 338 PIRSF Cyclin_A_B_D_E 2 336 IPR046965 GO:0016538|GO:0044772
Stsc271969g00011 338 Pfam Cyclin, C-terminal domain 204 326 IPR004367 -
Stsc271969g00011 338 PANTHER CYCLINS 52 321 IPR039361 -
Stsc271969g00011 338 SUPERFAMILY Cyclin-like 67 201 IPR036915 -
Stsc271969g00011 338 SMART Cyclin_C_2 204 327 IPR004367 -
Stsc271969g00011 338 FunFam Cyclin A1 191 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271969g00011 Stsc-Chr271969 42048 43994 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271969g00011 3 337 Core Cell Cycle Gene Families AT5G43080 55.620 7.19e-133 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271969g00011 K06627 - gmx:547779 428.713