Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271969g00010 ATGGAGACTCGTGCCGCCGCAAAGAGGAGGGCTATGGCTGCAAGCCTCACTGAGAATCAACCCCTCAAACGGAAGCGTGTTGTGTTAGGTGAACTTCCCAATTTCACTACGGAGAATTTGAGTGCCCAGAAACCCAAACCCAAACCCAAATCCAAATGCCTCAATGCTAAGCCCAAGAAAGCTTCTGTCAATGACAAGAATATCAATCCTGTTAAGGTTAAGGAGGAGAAGGAGAATGTGCTTGTTGATGAAGATGACGAGCTCACTAATGTTGACATTGTTGCCTCTGATATCTATATGTACCTTCGCAAGATGGAGCTGGAGAAGAATAGAAGGCCAAGAGTTGATTACCTTGAGAGGATTCAGAGAGATGTAACTGCGAACATGAGAGGGATTTTGGTGGATTGGTTGGTGGAAGTCGCAGAGGAATACAAGCTTCTCTCTGACACTCTCTATCTTTCGATTTCTTACATTGATAGATACCTCTCTATGAACCGTATCACCAAGCCAACCCTTCAGTTGCTGGGTGTTTCAGCAATGCTCATTGCTGCGAAATATGAAGAAATTAATCCCCCTCATGTGGAGGAGTTCTGCTTTATCACTGATAACACATACAACAAGTCAGAGGTAGTGGATATGGAAGCTGAAATCCTTAAGTCCTTGAATTTTGAAATGGGTAGCCCAACTATTAAGACCTTTTTAAGGAGGTTTAATGAGATTGCTTGTGAGGATCAAAAGGGTCAAAAATTGCAGTTTGAGTTTCTGTGTTATTACCTTGCTGAGCTAAGCTTGCTGGAGTATGCTTGTTTGAAGTTCTTGCCTTCTTTGATGGCTGCTGCTGTTATATTTCTTGCTAGATTTATCCTATCACCTAAATCAAATCCCTGGACTTTAACCCTTTATGACCGCACTGGATATGATTCACTTCAGTTGAAAGAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAGAAGGGGAGCATCCTTCCAAGCTATTAGGGAGAAATACAAGCAGCACAAGTTTAAGTATGTGGCAAATTTGCCTTCCCCTCCTCAGATACCAGATTTAAGCTTTGAAGATGAATTTTATGAAGAAAACTTTTATGATGATTGA 1158 0.3929 METRAAAKRRAMAASLTENQPLKRKRVVLGELPNFTTENLSAQKPKPKPKSKCLNAKPKKASVNDKNINPVKVKEEKENVLVDEDDELTNVDIVASDIYMYLRKMELEKNRRPRVDYLERIQRDVTANMRGILVDWLVEVAEEYKLLSDTLYLSISYIDRYLSMNRITKPTLQLLGVSAMLIAAKYEEINPPHVEEFCFITDNTYNKSEVVDMEAEILKSLNFEMGSPTIKTFLRRFNEIACEDQKGQKLQFEFLCYYLAELSLLEYACLKFLPSLMAAAVIFLARFILSPKSNPWTLTLYDRTGYDSLQLKEXXXXXXXXXXXXXXXXXXXXXXXXGRRGASFQAIREKYKQHKFKYVANLPSPPQIPDLSFEDEFYEENFYDD 385
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc271969g00010 385 FunFam Cyclin superfamily protein, putative 225 297 - -
Stsc271969g00010 385 Pfam Cyclin, N-terminal domain 97 225 IPR006671 -
Stsc271969g00010 385 SUPERFAMILY Cyclin-like 89 225 IPR036915 -
Stsc271969g00010 385 FunFam G2/mitotic-specific cyclin 113 224 - -
Stsc271969g00010 385 SMART Cyclin_C_2 228 365 IPR004367 -
Stsc271969g00010 385 Coils Coil 309 313 - -
Stsc271969g00010 385 MobiDBLite consensus disorder prediction 35 59 - -
Stsc271969g00010 385 ProSitePatterns Cyclins signature. 130 161 IPR006671 -
Stsc271969g00010 385 PIRSF Cyclin_A_B_D_E 1 374 IPR046965 GO:0016538|GO:0044772
Stsc271969g00010 385 SUPERFAMILY Cyclin-like 228 367 IPR036915 -
Stsc271969g00010 385 Gene3D - 97 361 - -
Stsc271969g00010 385 PANTHER CYCLINS 69 352 IPR039361 -
Stsc271969g00010 385 SMART cyclin_7 135 219 IPR013763 -
Stsc271969g00010 385 SMART cyclin_7 232 320 IPR013763 -
Stsc271969g00010 385 Gene3D - 113 226 - -
Stsc271969g00010 385 Pfam Cyclin, C-terminal domain 228 364 IPR004367 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc271969g00010 Stsc-Chr271969 38419 40479 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271969g00010 3 375 Core Cell Cycle Gene Families AT1G47230 50.000 1.78e-118 347
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271969g00010 K06627 - pop:7472680 376.326