Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271969g00009 ATGGGGAGAGTGAAGCTTCCCATCAAGAAGATTGAGAACACAACAAACAGGCAAGTCACATTCTCCAAGAGGAGGAATGGCCTCATCAAGAAAGCTTATGAGCTTTCTGTTCTCTGTGATGTTCATGTTGCTCTCATCATGTTCTCTCCTTCTGGAAGACCCACTCTCTTCTCTTCCAACACAAGCATTGAAGAAATTCTAGAGCGATATGTTAACCTTCCACCACATGAGCGCAAAAAGATATTTGAATGTAATCCATGTGAGATCACTACTCTTTGTGAGGCTGAATATCGCCAGCATGTCCTTCAGGAAACTCTAAAGCAAGTGCACTTCCGAAAATGTGCCTTGGAGGAAGAGTTTAATTTTGGTGCATCTCAACAGGCACATCTTGCAAAAACTGTAGATGTAGATGGATTATTTGTTGGTGGGACATCAAAGAATGCAGTAGAGTGGCTCCCACAGGGACAGGGAGATCCAAATGTTCATGTTCTCAACTTTGGAGATGCATATTCTCCTACTCCTCTTGGGGATCAACAATCACATAGTGCTGCTATTGACATGTTAGCTGCAAGTTCTACAAACACCCTTCAACTTCAAATGAATCCAAAGAGTAATAGTTCAGAATCATGCATACTAGCTCCTGAGTTTGGACAAGTTACAGATATCAATTCTTCCTCTTGGGAGCAACTCCATCATTTAGGGAATGGATCTTTGTCAGTGCCAGAGGCAAGAGAGGAAGGACAACTAATTGAACAATATCTTTCTCAGCTTCCTTCTTTAGACATCTTAGTATCCAATCAACATCATCAAACATGA 816 0.4154 MGRVKLPIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVHVALIMFSPSGRPTLFSSNTSIEEILERYVNLPPHERKKIFECNPCEITTLCEAEYRQHVLQETLKQVHFRKCALEEEFNFGASQQAHLAKTVDVDGLFVGGTSKNAVEWLPQGQGDPNVHVLNFGDAYSPTPLGDQQSHSAAIDMLAASSTNTLQLQMNPKSNSSESCILAPEFGQVTDINSSSWEQLHHLGNGSLSVPEAREEGQLIEQYLSQLPSLDILVSNQHHQT 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271969g00009 271 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
Stsc271969g00009 271 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc271969g00009 271 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Stsc271969g00009 271 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Stsc271969g00009 271 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc271969g00009 271 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc271969g00009 271 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc271969g00009 271 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc271969g00009 271 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Stsc271969g00009 271 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Stsc271969g00009 271 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271969g00009 Stsc-Chr271969 35998 38211 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271969g00009 1 79 Type I MADS-box Gene Family AT1G22130 73.418 5.79e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc271969g00009 SRF-TF 6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271969g00009 - - cam:101506754 265.388