Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271969g00008 ATGTGCTCCGGCGAGTCAGCTATGAACGGGGCTCAGTCGCGAGAGGATGAGTCGAAAGAAGACGACAGGGATGCAGAAGCGAACCGCCTGCTGCACCATCATCATCAGCAATCGACGTCGTCGGTGGACGACGAAGAGGTGGCGTACGAGGCAGGGGAGAAGATCCAGGTGGTAGATTTCGACTTGGTGGACGGCGACGACGACGATTCAGGTGTTCCCCCTCCGTTCTCATGGAAGAAGCTGTGGTTGTTCACTGGTCCCGGGTTCCTGATGAGCATAGCGTTCTTGGATCCGGGGAATCTGGAAGGGGATCTCCAGGCAGGAGCCATCGCAGGGTACACGCTTCTGTGGCTGCTGATGTGGGCCACCTTCATGGGACTCTTGATACAGCTTCTCTCGGCGAGGATTGGGGTGGCCACTGGGCGCCACCTGGCAGAGCTGTGTAGGGAGGAGTATCCCAATTGGGCGAGGCTTGTTCTCTGGTTCATGGCTGAGCTGGCACTCATTGGGGCTGATATTCAAGAAGTCATTGGCAGTGCCATCGCTATCCAAATTCTTAGCCGCGGGGTTTTCCCACTCTGGCTTGGAGTTTTGATTACCGCTTCTGATTGTTTTGTCTTTCTATTTCTTGAGAACTATGGAGTGAGGAAGTTGGAAGCTGCTTTTGCAGTTCTCATTGCTACTATGGCTCTTTCTTTTGCCTGGATGTTTGCTGATGCGAAACCTAGTGGGAACGAACTTTTGAAGGGTATTTTGCTCCCAAGACTTAGCTCAAAAACAATTCGTCAAGCTGTCGGTGTTGTTGGCTGTGTCATAATGCCGCACAACGTATTCTTGCATTCTGCTTTAGTGCAGTCAAGGAAGATAGATCCCCAGAAGAAAGGCCGGGTACAGGAGGCTATCAATTACTACACAATTGAGTCAACAGTTGCACTTGCAGTCTCCTTCATGATCAATCTATTTGTCACAACAGTTTTTGCCAAGGGATTTTATGGCACAAAGCAGGCTGATAGCATTGGATTGGTGAATGCAGGGCAGTACCTTGAGGAAAAGTATGGAGGAGGAATGTTCCCCATTCTTTATATATGGGGAATTGGGTTATTGGCAGCTGGACAAAGTAGCACCATCACAGGCACATATGCTGGCCAATTCATAATGGGTGGTTTCCTCAACCTTGGCTTAAAGAAATGGTTGAGAGCATTGATCACTCGTAGTTTTGCAATTGTGCCGACTATAGTCGTAGCTATTGTTTTTAATACATCAGAAGCCTCATTGGATGTTTTGAATGAATGGCTTAATGTGCTTCAGTCCATGCAAATTCCCTTTGCACTGATTCCCCTCCTGACTTTGGTCTCCAAGGAGCATATCATGGGGACCTTTAGGGTTGGGCCTGTTCTTGAGAGGGTGGCCTGGACAATTGCTGCACTTATAATGGTAATTAATGGGTATCTCTTGTTAGATTTCTTCCTGTCTGAGGTGAAGGGCTTGCTGCTTGGTTTTGTAGTATGTTCTTGCACAGCCGCCTATGTTGCATTCATTGCATATTTGATTTCTCAGAGCGGTGCACTTCCACACACTTGGGTTAATAGAATTCCCAAGGGTTTTTCTCTTCTCCAAATTGAATCAACAAATCCACAAATTAAAAATCCAGAAAATAGTACTGCAAACTCCAGCTAA 1677 0.477 MCSGESAMNGAQSREDESKEDDRDAEANRLLHHHHQQSTSSVDDEEVAYEAGEKIQVVDFDLVDGDDDDSGVPPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYTLLWLLMWATFMGLLIQLLSARIGVATGRHLAELCREEYPNWARLVLWFMAELALIGADIQEVIGSAIAIQILSRGVFPLWLGVLITASDCFVFLFLENYGVRKLEAAFAVLIATMALSFAWMFADAKPSGNELLKGILLPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKIDPQKKGRVQEAINYYTIESTVALAVSFMINLFVTTVFAKGFYGTKQADSIGLVNAGQYLEEKYGGGMFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLGLKKWLRALITRSFAIVPTIVVAIVFNTSEASLDVLNEWLNVLQSMQIPFALIPLLTLVSKEHIMGTFRVGPVLERVAWTIAALIMVINGYLLLDFFLSEVKGLLLGFVVCSCTAAYVAFIAYLISQSGALPHTWVNRIPKGFSLLQIESTNPQIKNPENSTANSS 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271969g00008 558 Hamap Divalent metal cation transporter MntH [mntH]. 66 489 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc271969g00008 558 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 79 457 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc271969g00008 558 PRINTS Natural resistance-associated macrophage protein signature 399 416 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc271969g00008 558 PRINTS Natural resistance-associated macrophage protein signature 215 236 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc271969g00008 558 PRINTS Natural resistance-associated macrophage protein signature 371 390 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc271969g00008 558 PRINTS Natural resistance-associated macrophage protein signature 433 452 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc271969g00008 558 PRINTS Natural resistance-associated macrophage protein signature 160 186 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc271969g00008 558 PRINTS Natural resistance-associated macrophage protein signature 264 287 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc271969g00008 558 PRINTS Natural resistance-associated macrophage protein signature 190 209 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc271969g00008 558 MobiDBLite consensus disorder prediction 12 46 - -
Stsc271969g00008 558 NCBIfam Nramp family divalent metal transporter 86 455 - -
Stsc271969g00008 558 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 38 518 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc271969g00008 558 MobiDBLite consensus disorder prediction 1 46 - -
Stsc271969g00008 558 Pfam Natural resistance-associated macrophage protein 102 463 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271969g00008 Stsc-Chr271969 29607 33252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271969g00008 15 520 Inorganic Solute Cotransporters AT1G47240 79.134 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271969g00008 K21398 - gmx:100795013 867.07