Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271968g00009 ATGGATTTGGATGATTTCCGATCCATATTGGATACAGCCGGCGTCGACGTTTGGCTCTTCATCGACACCGCCATCACCGTCGCCTCCTTGGATTGCGGCGACGAGCTGAGGCGACGGAGAGATGGAATCATAGAACGAATCTTCGCTGCCACCACGCCTCCTCCGCCCTGCCAGAACTGCGACGGCGATCGTAACCTGAGGTCCAATGGCCACCAAATCAAGAAACGCCTCAGCCCTAGCCCTAGCCCTCAGCGACAACACAGCCACCACCAGCAACGTCGTGGTGGTCGCGGTGCCGCCGCTGCTGTTTCTCCCTCGACGCCGCAGTCTCTCGGAGATGACGATGACAACGGCCACAACGACGCCCCCGAAGACGAACGTGAAGAGTTGGATCCTTACGGCGGCTTGTTCGATGACGAGCAGAAGAAGATTCTAGAGATTAAAGAGCAGCTCGAAGAACCTGACCAGCCTGAAGAATCGTTGGTGGAGCTGCTTCAAAATCTCGCGGACATGGATATTACATTCCAAGCGCTTAAGGAGACTGACATTGGGAGGCACGTGAATCGGTTGAGGAAGCATCCATCCAATGACGTTCGCCGATTGGTGAAGCTACTTGTCAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTTAGGTTGAATCAACCGGGTGCAACAGCTTCTCTCATGGCTGATGGGGACTCTCCACCGCTGAAAAACACCCAAAACGGGCATCATCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGAAGTTCTGGGTCTGACCGAAACACCTCAGAGGCAGAACCAAAACCAAAAGTGATTCCCCGCAAAGAAGCTCCGCCAAAACCAACGCCGCCACCTTCAGTCCCTACCCCTTCCATCGCCTTCCAAAACAGACAGAGAGAGCAAAGAGATTTTGATGCGGAGAGGCTTGCTTCGGCCAGGAAGCGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCGAAAAAGCAAAGAACGATTCAGGTGATGGACATCCACGAGTTACCAAAGTCAAAACCCAAGAATGCCTTCTTTGGAAAGAACAAAGGCAGTGGCGGTTCTCAGGGAAGGCACTGGTGA 1110 0.5297 MDLDDFRSILDTAGVDVWLFIDTAITVASLDCGDELRRRRDGIIERIFAATTPPPPCQNCDGDRNLRSNGHQIKKRLSPSPSPQRQHSHHQQRRGGRGAAAAVSPSTPQSLGDDDDNGHNDAPEDEREELDPYGGLFDDEQKKILEIKEQLEEPDQPEESLVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVRLNQPGATASLMADGDSPPLKNTQNGHHQIPDFAYSPNPHNGSSGSDRNTSEAEPKPKVIPRKEAPPKPTPPPSVPTPSIAFQNRQREQRDFDAERLASARKRLQENYKEAENAKKQRTIQVMDIHELPKSKPKNAFFGKNKGSGGSQGRHW 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271968g00009 369 MobiDBLite consensus disorder prediction 49 68 - -
Stsc271968g00009 369 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 138 225 IPR035441 -
Stsc271968g00009 369 MobiDBLite consensus disorder prediction 281 295 - -
Stsc271968g00009 369 CDD TFIIS_I 141 214 - -
Stsc271968g00009 369 ProSiteProfiles TFIIS N-terminal domain profile. 139 216 IPR017923 -
Stsc271968g00009 369 MobiDBLite consensus disorder prediction 303 350 - -
Stsc271968g00009 369 Pfam TFIIS helical bundle-like domain 164 213 IPR017923 -
Stsc271968g00009 369 Coils Coil 311 338 - -
Stsc271968g00009 369 MobiDBLite consensus disorder prediction 73 135 - -
Stsc271968g00009 369 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 369 IPR044790 -
Stsc271968g00009 369 SMART TFS2_5 144 215 IPR003617 GO:0005634
Stsc271968g00009 369 MobiDBLite consensus disorder prediction 227 369 - -
Stsc271968g00009 369 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 142 222 IPR035441 -
Stsc271968g00009 369 MobiDBLite consensus disorder prediction 234 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271968g00009 Stsc-Chr271968 57403 60057 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Stsc271968g00009 Med26 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271968g00009 - - aip:107622503 642.884